myRT

myRT report for GCA_902646175.1_WOLB0069

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Seq: CACRBG010000228.1 (1775 bp)
Overview 1 RT 1: 1-1698 bp Neighborhood of RT #1 [1, 1706] Integrase_H2C2 Peptidase_A17 RVT-UG26 Feature: gene Location: 1-498 bp Feature: domain Description: Integrase_H2C2 Location: 124-274 bp Feature: domain Description: Integrase_H2C2 Location: 1 24-274 bp Feature: gene Location: 548-898 bp Feature: domain Description: Peptidase_A17 Location: 551-791 bp Feature: domain Description: Peptidase_A1 7 Location: 551 -791 bp Feature: gene Location: 1272-1706 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 1497-1698 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 1 497-1 698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Integrase_H2C2 (pfam17921), Peptidase_A17 (pfam05380), RVT-UG26

Seq: CACRBG010000227.1 (1788 bp)
Overview 1 RT 1: 478-1786 bp Neighborhood of RT #1 [478, 1786] RT_RNaseH_2 RVT-UNC Feature: gene Location: 478-615 bp Feature: gene Location: 746-967 bp Feature: domain Description: RT_RNaseH_2 Location: 797-965 bp Feature: domain Description: RT_RNaseH_2 Location: 797-965 bp Feature: gene Location: 1021-1335 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1051-1261 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1051-12 61 bp Feature: gene Location: 1574-1786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_RNaseH_2 (pfam17919), RVT-DGRs/RVT-UG26/RVT-UG11(RVT-UNC)

Seq: CACRBG010000004.1 (16568 bp)
Overview 1 RT 1: 4664-10572 bp Neighborhood of RT #1 [4664, 10928] Virulence_RhuM RVT-GII PRK07078 repA Feature: gene Location: 4664-5668 bp Feature: domain Description: Virulence_RhuM Location: 4853-5603 bp Feature: domain Description: Virulence_RhuM Location: 4853 -5603 bp Feature: gene Location: 5880-6083 bp Feature: gene Location: 6254-7567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6509-7199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6509-7199 bp Feature: gene Location: 7480-7752 bp Feature: gene Location: 8733-10928 bp Feature: domain Description: PRK07078 Location: 8796-9714 bp Feature: domain Description: PRK07078 Location: 8796-9714 bp Feature: domain Description: repA Location: 9813-10572 bp Feature: domain Description: repA Location: 9813 -10572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Virulence_RhuM (pfam13310), RVT-GII, PRK07078 (hypothetical protein; Validated), repA

Seq: CACRBG010000050.1 (6407 bp)
Overview 1 RT 1: 513-6261 bp Neighborhood of RT #1 [513, 6404] RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Gypsy Feature: gene Location: 513-1793 bp Feature: gene Location: 2003-5137 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2984-3158 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2984 -3158 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3512-3854 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3512-3854 bp Feature: domain Description: Integrase_H2C2 Location: 4259-4403 bp Feature: domain Description: Integrase_H2C2 Location: 4 259-4 4 03 bp Feature: domain Description: rve Location: 4454-4760 bp Feature: domain Description: rve Location: 4 4 54 -4 760 bp Feature: gene Location: 5199-6404 bp Feature: domain Description: Gypsy Location: 5214-6261 bp Feature: domain Description: Gypsy Location: 5214 -6261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG13/RVT-UG23/RVT-DGRs/RVT-Retrons(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), Gypsy (pfam07253)

Seq: CACRBG010000274.1 (1341 bp)
Overview 1 RT 1: 219-1339 bp Neighborhood of RT #1 [219, 1338] RVT_N RVT-GII Feature: gene Location: 219-362 bp Feature: gene Location: 400-1338 bp Feature: domain Description: RVT_N Location: 451-688 bp Feature: domain Description: RVT_N Location: 45 1-688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: CACRBG010000251.1 (1574 bp)
Overview 1 RT 1: 48-1543 bp Neighborhood of RT #1 [48, 1572] RVT_N RVT-GII YkfC Feature: gene Location: 48-191 bp Feature: gene Location: 229-1572 bp Feature: domain Description: RVT_N Location: 280-523 bp Feature: domain Description: RVT_N Location: 280-523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-1219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56 8-1219 bp Feature: domain Description: YkfC Location: 1219-1543 bp Feature: domain Description: YkfC Location: 1219-1543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)