myRT

myRT report for GCA_902646845.1_WOLB1001

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Seq: CACREA010000110.1 (1988 bp)
Overview 1 RT 1: 3-1943 bp Neighborhood of RT #1 [3, 1987] PDDEXK_2 RVT_N RVT-GII RVT-GII GIIM Feature: gene Location: 3-128 bp Feature: domain Description: PDDEXK_2 Location: 9-114 bp Feature: domain Description: PDDEXK_2 Location: 9-1 1 4 bp Feature: gene Location: 164-295 bp Feature: gene Location: 549-1325 bp Feature: domain Description: RVT_N Location: 660-906 bp Feature: domain Description: RVT_N Location: 660-906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1 260 bp Feature: gene Location: 1394-1987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1415-1634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 5-1 634 bp Feature: domain Description: GIIM Note: maturase Location: 1727-1943 bp Feature: domain Description: GIIM Note: maturase Location: 1 727-1 943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CACREA010000015.1 (17990 bp)
Overview 1 RT 1: 1034-5623 bp Neighborhood of RT #1 [1034, 5623] DDE_Tnp_1 RVT-GII Intron_maturas2 HNHc DDE_Tnp_1 Feature: gene Location: 1034-1201 bp Feature: gene Location: 1218-1655 bp Feature: domain Description: DDE_Tnp_1 Location: 1224-1413 bp Feature: domain Description: DDE_Tnp_1 Location: 12 2 4-1413 bp Feature: gene Location: 1872-3665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2139-2928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 139-2 92 8 bp Feature: domain Description: Intron_maturas2 Location: 3021-3282 bp Feature: domain Description: Intron_maturas2 Location: 302 1-32 82 bp Feature: domain Description: HNHc Note: nucleases Location: 3438-3618 bp Feature: domain Description: HNHc Note: nucleases Location: 3438-3618 bp Feature: gene Location: 4281-5012 bp Feature: domain Description: DDE_Tnp_1 Location: 4296-4770 bp Feature: domain Description: DDE_Tnp_1 Location: 42 96-4770 bp Feature: gene Location: 5033-5623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CACREA010000007.1 (26761 bp)
Overview 1 RT 1: 18283-21667 bp Neighborhood of RT #1 [18283, 21667] pcrA RVT-GII Feature: gene Location: 18283-18711 bp Feature: gene Location: 18839-20755 bp Feature: domain Description: pcrA Location: 18851-20735 bp Feature: domain Description: pcrA Location: 18851-2073 5 bp Feature: gene Location: 20979-21122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20982-21117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20982-21117 bp Feature: gene Location: 21285-21506 bp Feature: gene Location: 21539-21667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pcrA (TIGR01073), RVT-GII

Seq: CACREA010000106.1 (2185 bp)
Overview 1 RT 1: 3-2063 bp Neighborhood of RT #1 [3, 2063] RVT-GII Feature: gene Location: 3-152 bp Feature: gene Location: 259-1563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514 -1204 bp Feature: gene Location: 1548-2063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CACREA010000108.1 (2068 bp)
Overview 1 RT 1: 219-1675 bp Neighborhood of RT #1 [219, 1947] RVT_N RVT-GII GIIM Feature: gene Location: 219-362 bp Feature: gene Location: 400-1947 bp Feature: domain Description: RVT_N Location: 451-688 bp Feature: domain Description: RVT_N Location: 45 1-688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1390 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1675 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CACREA010000005.1 (32923 bp)
Overview 1 RT 1: 21379-31813 bp Neighborhood of RT #1 [21379, 31878] COG4279 HepA PRK07078 repA RVT-GII Virulence_RhuM Feature: gene Location: 21379-24906 bp Feature: domain Description: COG4279 Location: 21397-21925 bp Feature: domain Description: COG4279 Location: 21397-21925 bp Feature: domain Description: HepA Location: 22828-24883 bp Feature: domain Description: HepA Location: 22828-24883 bp Feature: gene Location: 25614-27809 bp Feature: domain Description: PRK07078 Location: 25677-26595 bp Feature: domain Description: PRK07078 Location: 256 77-26 595 bp Feature: domain Description: repA Location: 26694-27453 bp Feature: domain Description: repA Location: 26 6 94-27453 bp Feature: gene Location: 28975-30288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29230-29920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29230-29920 bp Feature: gene Location: 30459-30662 bp Feature: gene Location: 30874-31878 bp Feature: domain Description: Virulence_RhuM Location: 31063-31813 bp Feature: domain Description: Virulence_RhuM Location: 3106 3-31813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4279 (Uncharacterized conserved protein, contains Zn finger domain ), HepA (COG0553), PRK07078 (hypothetical protein; Validated), repA, RVT-GII, Virulence_RhuM (pfam13310)