myRT

myRT report for GCA_902646875.1_WOLB1002

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Seq: CACRDS010000004.1 (32922 bp)
Overview 1 RT 1: 21378-31812 bp Neighborhood of RT #1 [21378, 31877] COG4279 HepA PRK07078 repA RVT-GII Virulence_RhuM Feature: gene Location: 21378-24905 bp Feature: domain Description: COG4279 Location: 21396-21924 bp Feature: domain Description: COG4279 Location: 21 396-21 924 bp Feature: domain Description: HepA Location: 22827-24882 bp Feature: domain Description: HepA Location: 22827-24882 bp Feature: gene Location: 25613-27808 bp Feature: domain Description: PRK07078 Location: 25676-26594 bp Feature: domain Description: PRK07078 Location: 25676-26594 bp Feature: domain Description: repA Location: 26693-27452 bp Feature: domain Description: repA Location: 26693-27452 bp Feature: gene Location: 28974-30287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29229-29919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29229-2991 9 bp Feature: gene Location: 30458-30661 bp Feature: gene Location: 30873-31877 bp Feature: domain Description: Virulence_RhuM Location: 31062-31812 bp Feature: domain Description: Virulence_RhuM Location: 31 062-31 81 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4279 (Uncharacterized conserved protein, contains Zn finger domain ), HepA (COG0553), PRK07078 (hypothetical protein; Validated), repA, RVT-GII, Virulence_RhuM (pfam13310)

Seq: CACRDS010000100.1 (3066 bp)
Overview 1 RT 1: 2-3064 bp Neighborhood of RT #1 [2, 3064] ANK ANK RVT-GII GIIM ANK Feature: gene Location: 2-409 bp Feature: domain Description: ANK Location: 38-110 bp Feature: domain Description: ANK Location: 38-110 bp Feature: domain Description: ANK Location: 137-392 bp Feature: domain Description: ANK Location: 137-392 bp Feature: gene Location: 459-1706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663-1320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663-132 0 bp Feature: domain Description: GIIM Note: maturase Location: 1401-1626 bp Feature: domain Description: GIIM Note: maturase Location: 1401-162 6 bp Feature: gene Location: 2241-2417 bp Feature: domain Description: ANK Location: 2301-2403 bp Feature: domain Description: ANK Location: 2 301-2 403 bp Feature: gene Location: 2585-3064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ANK (smart00248), RVT-GII, GIIM (pfam08388)

Seq: CACRDS010000113.1 (2185 bp)
Overview 1 RT 1: 779-1943 bp Neighborhood of RT #1 [779, 2029] RVT-GII GIIM Feature: gene Location: 779-2029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 983-1643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 983 -1643 bp Feature: domain Description: GIIM Note: maturase Location: 1724-1943 bp Feature: domain Description: GIIM Note: maturase Location: 1724-1943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CACRDS010000117.1 (1988 bp)
Overview 1 RT 1: 3-1943 bp Neighborhood of RT #1 [3, 1987] PDDEXK_2 RVT_N RVT-GII RVT-GII GIIM Feature: gene Location: 3-128 bp Feature: domain Description: PDDEXK_2 Location: 9-114 bp Feature: domain Description: PDDEXK_2 Location: 9-114 bp Feature: gene Location: 164-295 bp Feature: gene Location: 549-1325 bp Feature: domain Description: RVT_N Location: 660-906 bp Feature: domain Description: RVT_N Location: 660-906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94 8-1260 bp Feature: gene Location: 1394-1987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1415-1634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 15-1634 bp Feature: domain Description: GIIM Note: maturase Location: 1727-1943 bp Feature: domain Description: GIIM Note: maturase Location: 1727-194 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CACRDS010000114.1 (2185 bp)
Overview 1 RT 1: 3-2063 bp Neighborhood of RT #1 [3, 2063] RVT-GII Feature: gene Location: 3-152 bp Feature: gene Location: 259-1563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 14-1204 bp Feature: gene Location: 1548-2063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CACRDS010000005.1 (26761 bp)
Overview 1 RT 1: 18839-21667 bp Neighborhood of RT #1 [18839, 21667] pcrA pcrA RVT-GII Feature: gene Location: 18839-19939 bp Feature: domain Description: pcrA Location: 18851-19934 bp Feature: domain Description: pcrA Location: 18851-19934 bp Feature: gene Location: 20303-20755 bp Feature: domain Description: pcrA Location: 20324-20738 bp Feature: domain Description: pcrA Location: 20324-20738 bp Feature: gene Location: 20979-21122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20982-21117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20982-21117 bp Feature: gene Location: 21285-21506 bp Feature: gene Location: 21539-21667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pcrA (TIGR01073), RVT-GII

Seq: CACRDS010000132.1 (1270 bp)
Overview 1 RT 1: 1-877 bp Neighborhood of RT #1 [1, 1149] RVT-GII GIIM Feature: gene Location: 1-1149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-592 bp Feature: domain Description: GIIM Note: maturase Location: 643-877 bp Feature: domain Description: GIIM Note: maturase Location: 643-87 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)