myRT

myRT report for GCA_902647005.1_WOLB1016

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Seq: CACRER010000134.1 (2070 bp)
Overview 1 RT 1: 123-1955 bp Neighborhood of RT #1 [123, 1955] RVT_N RVT-GII GIIM Feature: gene Location: 123-1670 bp Feature: domain Description: RVT_N Location: 174-411 bp Feature: domain Description: RVT_N Location: 1 74-41 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-1113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-1 1 1 3 bp Feature: domain Description: GIIM Note: maturase Location: 1164-1398 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 64-1 398 bp Feature: gene Location: 1722-1955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CACRER010000039.1 (11922 bp)
Overview 1 RT 1: 6778-10162 bp Neighborhood of RT #1 [6778, 10162] pcrA RVT-GII Feature: gene Location: 6778-7206 bp Feature: gene Location: 7334-9250 bp Feature: domain Description: pcrA Location: 7346-9230 bp Feature: domain Description: pcrA Location: 7346-92 30 bp Feature: gene Location: 9474-9617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9477-9612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9477-9612 bp Feature: gene Location: 9780-10001 bp Feature: gene Location: 10034-10162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pcrA (TIGR01073), RVT-GII

Seq: CACRER010000014.1 (16831 bp)
Overview 1 RT 1: 1046-6954 bp Neighborhood of RT #1 [1046, 7310] Virulence_RhuM RVT-GII PRK07078 repA Feature: gene Location: 1046-2050 bp Feature: domain Description: Virulence_RhuM Location: 1235-1985 bp Feature: domain Description: Virulence_RhuM Location: 123 5-1985 bp Feature: gene Location: 2262-2465 bp Feature: gene Location: 2636-3949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2891-3581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2891-3 581 bp Feature: gene Location: 3862-4134 bp Feature: gene Location: 5115-7310 bp Feature: domain Description: PRK07078 Location: 5178-6096 bp Feature: domain Description: PRK07078 Location: 5178-6096 bp Feature: domain Description: repA Location: 6195-6954 bp Feature: domain Description: repA Location: 6195-6954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Virulence_RhuM (pfam13310), RVT-GII, PRK07078 (hypothetical protein; Validated), repA

Seq: CACRER010000045.1 (10982 bp)
Overview 1 RT 1: 2-4209 bp Neighborhood of RT #1 [2, 4209] RVT-GII Intron_maturas2 HNHc DDE_Tnp_1 Feature: gene Location: 2-241 bp Feature: gene Location: 458-2251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 725-1514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 725-1514 bp Feature: domain Description: Intron_maturas2 Location: 1607-1868 bp Feature: domain Description: Intron_maturas2 Location: 1607-1868 bp Feature: domain Description: HNHc Note: nucleases Location: 2024-2204 bp Feature: domain Description: HNHc Note: nucleases Location: 2024 -2204 bp Feature: gene Location: 2867-3598 bp Feature: domain Description: DDE_Tnp_1 Location: 2882-3356 bp Feature: domain Description: DDE_Tnp_1 Location: 2882-3356 bp Feature: gene Location: 3619-4209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DDE_Tnp_1 (pfam01609)

Seq: CACRER010000137.1 (1993 bp)
Overview 1 RT 1: 1-1977 bp Neighborhood of RT #1 [1, 1991] RVT-GII GIIM RVT_N RVT-GII PDDEXK_2 Feature: gene Location: 1-600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-241 bp Feature: domain Description: GIIM Note: maturase Location: 334-550 bp Feature: domain Description: GIIM Note: maturase Location: 334-5 5 0 bp Feature: gene Location: 669-1445 bp Feature: domain Description: RVT_N Location: 780-1026 bp Feature: domain Description: RVT_N Location: 780-1026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1068-1380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1068-1380 bp Feature: gene Location: 1866-1991 bp Feature: domain Description: PDDEXK_2 Location: 1872-1977 bp Feature: domain Description: PDDEXK_2 Location: 1872-1977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), PDDEXK_2 (pfam12784)