myRT

myRT report for GCA_902647845.1_WOLB1107

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Seq: CACRHS010000151.1 (2663 bp)
Overview 1 RT 1: 3-2662 bp Neighborhood of RT #1 [3, 2662] PDDEXK_2 RVT_N RVT-GII GIIM Feature: gene Location: 3-401 bp Feature: domain Description: PDDEXK_2 Location: 129-393 bp Feature: domain Description: PDDEXK_2 Location: 1 29-393 bp Feature: gene Location: 398-1945 bp Feature: domain Description: RVT_N Location: 449-692 bp Feature: domain Description: RVT_N Location: 449-692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 737-1388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 737-1 388 bp Feature: domain Description: GIIM Note: maturase Location: 1439-1673 bp Feature: domain Description: GIIM Note: maturase Location: 1 439-1 673 bp Feature: gene Location: 1983-2126 bp Feature: gene Location: 2381-2662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CACRHS010000200.1 (2068 bp)
Overview 1 RT 1: 219-1675 bp Neighborhood of RT #1 [219, 1947] RVT_N RVT-GII GIIM Feature: gene Location: 219-362 bp Feature: gene Location: 400-1947 bp Feature: domain Description: RVT_N Location: 451-688 bp Feature: domain Description: RVT_N Location: 451-688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1390 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1675 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CACRHS010000133.1 (2986 bp)
Overview 1 RT 1: 546-2870 bp Neighborhood of RT #1 [546, 2983] Integrase_H2C2 rve RVT-UG11 RNase_HI_RT_Ty3 Feature: gene Location: 546-740 bp Feature: gene Location: 918-1649 bp Feature: domain Description: Integrase_H2C2 Location: 1143-1287 bp Feature: domain Description: Integrase_H2C2 Location: 1143 -1287 bp Feature: domain Description: rve Location: 1335-1644 bp Feature: domain Description: rve Location: 13 3 5-1644 bp Feature: gene Location: 1706-2983 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2009-2174 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2009-2174 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2525-2870 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2525-2870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Integrase_H2C2 (pfam17921), rve (pfam00665), RVT-UG11, RNase_HI_RT_Ty3 (cd09274)

Seq: CACRHS010000002.1 (24366 bp)
Overview 1 RT 1: 17480-23388 bp Neighborhood of RT #1 [17480, 23744] Virulence_RhuM RVT-GII PRK07078 repA Feature: gene Location: 17480-18484 bp Feature: domain Description: Virulence_RhuM Location: 17669-18419 bp Feature: domain Description: Virulence_RhuM Location: 17669-184 19 bp Feature: gene Location: 18696-18899 bp Feature: gene Location: 19070-20383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19325-20015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19325-20015 bp Feature: gene Location: 20296-20568 bp Feature: gene Location: 21549-23744 bp Feature: domain Description: PRK07078 Location: 21612-22530 bp Feature: domain Description: PRK07078 Location: 21612-22530 bp Feature: domain Description: repA Location: 22629-23388 bp Feature: domain Description: repA Location: 22629-23388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Virulence_RhuM (pfam13310), RVT-GII, PRK07078 (hypothetical protein; Validated), repA