myRT

myRT report for GCA_902647945.1_WOLB1113

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Seq: CACRHY010000114.1 (3190 bp)
Overview 1 RT 1: 2-2752 bp Neighborhood of RT #1 [2, 2949] PDDEXK_2 RVT_N RVT-GII GIIM PDDEXK_2 Feature: gene Location: 2-526 bp Feature: domain Description: PDDEXK_2 Location: 128-524 bp Feature: domain Description: PDDEXK_2 Location: 1 28-524 bp Feature: gene Location: 523-2070 bp Feature: domain Description: RVT_N Location: 574-817 bp Feature: domain Description: RVT_N Location: 574-81 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1 51 3 bp Feature: domain Description: GIIM Note: maturase Location: 1564-1798 bp Feature: domain Description: GIIM Note: maturase Location: 1 564-1 798 bp Feature: gene Location: 2108-2251 bp Feature: gene Location: 2506-2949 bp Feature: domain Description: PDDEXK_2 Location: 2533-2752 bp Feature: domain Description: PDDEXK_2 Location: 2533-2752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CACRHY010000248.1 (1632 bp)
Overview 1 RT 1: 219-1630 bp Neighborhood of RT #1 [219, 1629] RVT_N RVT-GII GIIM Feature: gene Location: 219-362 bp Feature: gene Location: 400-1629 bp Feature: domain Description: RVT_N Location: 451-688 bp Feature: domain Description: RVT_N Location: 451-688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1390 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1630 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CACRHY010000001.1 (22790 bp)
Overview 1 RT 1: 623-6822 bp Neighborhood of RT #1 [623, 6887] PRK07078 repA RVT-GII Virulence_RhuM Feature: gene Location: 623-2818 bp Feature: domain Description: PRK07078 Location: 686-1604 bp Feature: domain Description: PRK07078 Location: 686-1604 bp Feature: domain Description: repA Location: 1703-2462 bp Feature: domain Description: repA Location: 1703 -2462 bp Feature: gene Location: 3984-5297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4239-4929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423 9-4929 bp Feature: gene Location: 5468-5671 bp Feature: gene Location: 5883-6887 bp Feature: domain Description: Virulence_RhuM Location: 6072-6822 bp Feature: domain Description: Virulence_RhuM Location: 6072-6822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07078 (hypothetical protein; Validated), repA, RVT-GII, Virulence_RhuM (pfam13310)

Seq: CACRHY010000219.1 (1769 bp)
Overview 1 RT 1: 1-1408 bp Neighborhood of RT #1 [1, 1623] RVT-UG11 RNase_HI_RT_Ty3 Integrase_H2C2 Feature: gene Location: 1-282 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 13-169 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 13-169 bp Feature: gene Location: 462-593 bp Feature: gene Location: 649-1623 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 652-868 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 652-868 bp Feature: domain Description: Integrase_H2C2 Location: 1264-1408 bp Feature: domain Description: Integrase_H2C2 Location: 1264 -14 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921)