myRT

myRT report for GCA_902648005.1_WOLB1117

Download annotations/find similar RTs

Seq: CACRIH010000097.1 (3457 bp)
Overview 1 RT 1: 695-3454 bp Neighborhood of RT #1 [695, 3456] RNase_HI_RT_Ty3 Integrase_H2C2 rve RVT-UG11 RT_LTR Feature: gene Location: 695-889 bp Feature: gene Location: 1067-2353 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1109-1451 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1 1 09-1 451 bp Feature: domain Description: Integrase_H2C2 Location: 1847-1991 bp Feature: domain Description: Integrase_H2C2 Location: 1 847-1 991 bp Feature: domain Description: rve Location: 2039-2348 bp Feature: domain Description: rve Location: 2039-2348 bp Feature: gene Location: 2362-2829 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2368-2527 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 2368-2527 bp Feature: gene Location: 2860-3456 bp Feature: domain Description: RT_LTR Location: 3172-3454 bp Feature: domain Description: RT_LTR Location: 31 72-3454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), RVT-UG11, RT_LTR (cd01647)

Seq: CACRIH010000168.1 (2245 bp)
Overview 1 RT 1: 1-1912 bp Neighborhood of RT #1 [1, 2184] RVT_N RVT-GII GIIM Feature: gene Location: 1-201 bp Feature: gene Location: 456-599 bp Feature: gene Location: 637-2184 bp Feature: domain Description: RVT_N Location: 688-931 bp Feature: domain Description: RVT_N Location: 688-931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 976-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 976-162 7 bp Feature: domain Description: GIIM Note: maturase Location: 1678-1912 bp Feature: domain Description: GIIM Note: maturase Location: 1678-1912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CACRIH010000237.1 (1721 bp)
Overview 1 RT 1: 219-1648 bp Neighborhood of RT #1 [219, 1719] RVT_N RVT-GII GIIM Feature: gene Location: 219-362 bp Feature: gene Location: 400-1719 bp Feature: domain Description: RVT_N Location: 451-688 bp Feature: domain Description: RVT_N Location: 451-688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 9-13 90 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1648 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CACRIH010000019.1 (7805 bp)
Overview 1 RT 1: 628-6827 bp Neighborhood of RT #1 [628, 6892] PRK07078 repA RVT-GII Virulence_RhuM Feature: gene Location: 628-2823 bp Feature: domain Description: PRK07078 Location: 691-1609 bp Feature: domain Description: PRK07078 Location: 691-1609 bp Feature: domain Description: repA Location: 1708-2467 bp Feature: domain Description: repA Location: 1708-24 67 bp Feature: gene Location: 3989-5302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4244-4934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 24 4 -4 934 bp Feature: gene Location: 5473-5676 bp Feature: gene Location: 5888-6892 bp Feature: domain Description: Virulence_RhuM Location: 6077-6827 bp Feature: domain Description: Virulence_RhuM Location: 6077-6827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07078 (hypothetical protein; Validated), repA, RVT-GII, Virulence_RhuM (pfam13310)