myRT

myRT report for GCA_902648475.1_WOLB1162

Download annotations/find similar RTs

Seq: CACRJV010000001.1 (32923 bp)
Overview 1 RT 1: 21379-31813 bp Neighborhood of RT #1 [21379, 31878] COG4279 HepA PRK07078 repA RVT-GII Virulence_RhuM Feature: gene Location: 21379-24906 bp Feature: domain Description: COG4279 Location: 21397-21925 bp Feature: domain Description: COG4279 Location: 21 397-21 925 bp Feature: domain Description: HepA Location: 22828-24883 bp Feature: domain Description: HepA Location: 22828-24883 bp Feature: gene Location: 25614-27809 bp Feature: domain Description: PRK07078 Location: 25677-26595 bp Feature: domain Description: PRK07078 Location: 25677-26595 bp Feature: domain Description: repA Location: 26694-27453 bp Feature: domain Description: repA Location: 26694-27453 bp Feature: gene Location: 28975-30288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29230-29920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29230-29920 bp Feature: gene Location: 30459-30662 bp Feature: gene Location: 30874-31878 bp Feature: domain Description: Virulence_RhuM Location: 31063-31813 bp Feature: domain Description: Virulence_RhuM Location: 31 063-31 81 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4279 (Uncharacterized conserved protein, contains Zn finger domain ), HepA (COG0553), PRK07078 (hypothetical protein; Validated), repA, RVT-GII, Virulence_RhuM (pfam13310)

Seq: CACRJV010000156.1 (1777 bp)
Overview 1 RT 1: 1-1655 bp Neighborhood of RT #1 [1, 1655] RVT-GII Feature: gene Location: 1-1155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256-946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 56-946 bp Feature: gene Location: 1140-1655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CACRJV010000044.1 (10027 bp)
Overview 1 RT 1: 3-2974 bp Neighborhood of RT #1 [3, 2974] RVT-GII DDE_Tnp_1 Feature: gene Location: 3-1016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270-1014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270-1014 bp Feature: gene Location: 1632-2363 bp Feature: domain Description: DDE_Tnp_1 Location: 1647-2121 bp Feature: domain Description: DDE_Tnp_1 Location: 1647-2121 bp Feature: gene Location: 2384-2974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CACRJV010000168.1 (1224 bp)
Overview 1 RT 1: 96-1086 bp Neighborhood of RT #1 [96, 1223] RVT_N RVT-GII Feature: gene Location: 96-1223 bp Feature: domain Description: RVT_N Location: 147-384 bp Feature: domain Description: RVT_N Location: 14 7-384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435-1086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 35-1086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: CACRJV010000025.1 (14445 bp)
Overview 1 RT 1: 5967-9351 bp Neighborhood of RT #1 [5967, 9351] pcrA RVT-GII Feature: gene Location: 5967-6395 bp Feature: gene Location: 6523-8439 bp Feature: domain Description: pcrA Location: 6535-8419 bp Feature: domain Description: pcrA Location: 65 35 -8419 bp Feature: gene Location: 8663-8806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8666-8801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8666-8801 bp Feature: gene Location: 8969-9190 bp Feature: gene Location: 9223-9351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pcrA (TIGR01073), RVT-GII

Seq: CACRJV010000152.1 (1988 bp)
Overview 1 RT 1: 3-1943 bp Neighborhood of RT #1 [3, 1987] PDDEXK_2 RVT_N RVT-GII RVT-GII GIIM Feature: gene Location: 3-128 bp Feature: domain Description: PDDEXK_2 Location: 9-114 bp Feature: domain Description: PDDEXK_2 Location: 9-114 bp Feature: gene Location: 164-295 bp Feature: gene Location: 549-1325 bp Feature: domain Description: RVT_N Location: 660-906 bp Feature: domain Description: RVT_N Location: 6 6 0-906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-126 0 bp Feature: gene Location: 1394-1987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1415-1634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1415-16 34 bp Feature: domain Description: GIIM Note: maturase Location: 1727-1943 bp Feature: domain Description: GIIM Note: maturase Location: 1727-1943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)