myRT

myRT report for GCA_902668605.1_EC1_50_assembly

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Seq: CACRWJ010000001.1 (5364349 bp)
Overview 1 RT 1: 2133575-2137516 bp 2 RT 2: 2267950-2272194 bp Neighborhood of RT #1 [2133575, 2137516] RVT-Retrons Neighborhood of RT #2 [2267950, 2272194] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 2133575-2133814 bp Feature: gene Location: 2134121-2134297 bp Feature: gene Location: 2134370-2136142 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2134529-2135147 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 34529-21 351 47 bp Feature: gene Location: 2136164-2136331 bp Feature: gene Location: 2136377-2137516 bp Feature: gene Location: 2267950-2268852 bp Feature: domain Description: Macro_Appr_pase Location: 2267968-2268481 bp Feature: domain Description: Macro_Appr_pase Location: 2267968-2268481 bp Feature: gene Location: 2268861-2269445 bp Feature: domain Description: Caudo_TAP Location: 2269077-2269434 bp Feature: domain Description: Caudo_TAP Location: 2269077-2269434 bp Feature: gene Location: 2269558-2270928 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2269786-2270392 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 2269786-2270392 bp Feature: gene Location: 2270906-2271610 bp Feature: domain Description: SLATT_5 Location: 2271068-2271578 bp Feature: domain Description: SLATT_5 Location: 2271 068-2271 578 bp Feature: gene Location: 2272018-2272194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)

Seq: CACRWJ010000002.1 (170727 bp)
Overview 1 RT 1: 40993-45043 bp 2 RT 2: 140970-145106 bp Neighborhood of RT #1 [40993, 45096] InsE PHA02517 RVT-GII GIIM PHA02517 autotrans_barl Neighborhood of RT #2 [140970, 145106] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 40993-41319 bp Feature: domain Description: InsE Location: 40996-41317 bp Feature: domain Description: InsE Location: 40996-41317 bp Feature: gene Location: 41319-41798 bp Feature: domain Description: PHA02517 Location: 41379-41733 bp Feature: domain Description: PHA02 517 Location: 41379-41733 bp Feature: gene Location: 42390-43913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42663-43395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 663-43395 bp Feature: domain Description: GIIM Note: maturase Location: 43470-43668 bp Feature: domain Description: GIIM Note: maturase Location: 43470-43668 bp Feature: gene Location: 44090-44476 bp Feature: domain Description: PHA02517 Location: 44093-44474 bp Feature: domain Description: PHA02 517 Location: 44093-44474 bp Feature: gene Location: 44479-45096 bp Feature: domain Description: autotrans_barl Location: 44602-45043 bp Feature: domain Description: autotrans_barl Location: 44602 -45043 bp Feature: gene Location: 140970-141203 bp Feature: domain Description: DUF905 Location: 141000-141198 bp Feature: domain Description: DUF905 Location: 141000-141198 bp Feature: gene Location: 141271-141723 bp Feature: domain Description: PRK13732 Location: 141277-141721 bp Feature: domain Description: PRK13732 Location: 1412 77-14172 1 bp Feature: gene Location: 141918-143819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142185-143016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 185-143016 bp Feature: domain Description: Intron_maturas2 Location: 143130-143388 bp Feature: domain Description: Intron_maturas2 Location: 143130-143388 bp Feature: domain Description: HNHc Note: nucleases Location: 143562-143724 bp Feature: domain Description: HNHc Note: nucleases Location: 143562 -14372 4 bp Feature: gene Location: 144561-144764 bp Feature: gene Location: 144816-145106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), autotrans_barl (TIGR01414), DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), Intron_maturas2 (pfam01348), HNHc (smart00507)