myRT

myRT report for GCA_902668675.1_EC0_56_assembly

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Seq: CACRWL010000001.1 (4813207 bp)
Overview 1 RT 1: 120959-125345 bp Neighborhood of RT #1 [120959, 125345] RVT-Retrons Feature: gene Location: 120959-122098 bp Feature: gene Location: 122144-122311 bp Feature: gene Location: 122333-124105 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 122492-123110 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 22492-1 231 1 0 bp Feature: gene Location: 124661-124900 bp Feature: gene Location: 125115-125345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: CACRWL010000007.1 (2723 bp)
Overview 1 RT 1: 330-2480 bp Neighborhood of RT #1 [330, 2575] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 330-539 bp Feature: gene Location: 674-2575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941-1772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941-1772 bp Feature: domain Description: Intron_maturas2 Location: 1886-2144 bp Feature: domain Description: Intron_maturas2 Location: 1886-2 144 bp Feature: domain Description: HNHc Note: nucleases Location: 2318-2480 bp Feature: domain Description: HNHc Note: nucleases Location: 2 318-2 480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CACRWL010000003.1 (155220 bp)
Overview 1 RT 1: 70071-74207 bp 2 RT 2: 140811-144861 bp Neighborhood of RT #1 [70071, 74207] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [140811, 144914] InsE PHA02517 RVT-GII GIIM PHA02517 autotrans_barl Feature: gene Location: 70071-70304 bp Feature: domain Description: DUF905 Location: 70101-70299 bp Feature: domain Description: DUF905 Location: 70101-70299 bp Feature: gene Location: 70372-70824 bp Feature: domain Description: PRK13732 Location: 70378-70822 bp Feature: domain Description: PRK13 73 2 Location: 703 78-70822 bp Feature: gene Location: 71019-72920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71286-72117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71286-72117 bp Feature: domain Description: Intron_maturas2 Location: 72231-72489 bp Feature: domain Description: Intron_maturas2 Location: 7223 1-72489 bp Feature: domain Description: HNHc Note: nucleases Location: 72663-72825 bp Feature: domain Description: HNHc Note: nucleases Location: 72663 -72825 bp Feature: gene Location: 73662-73865 bp Feature: gene Location: 73917-74207 bp Feature: gene Location: 140811-141137 bp Feature: domain Description: InsE Location: 140814-141135 bp Feature: domain Description: InsE Location: 140814-14113 5 bp Feature: gene Location: 141137-141616 bp Feature: domain Description: PHA02517 Location: 141197-141551 bp Feature: domain Description: PHA02517 Location: 141197-141551 bp Feature: gene Location: 142208-143731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142481-143213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142481-143 213 bp Feature: domain Description: GIIM Note: maturase Location: 143288-143486 bp Feature: domain Description: GIIM Note: maturase Location: 143 288-143 486 bp Feature: gene Location: 143908-144294 bp Feature: domain Description: PHA02517 Location: 143911-144292 bp Feature: domain Description: PHA02517 Location: 143 911-144292 bp Feature: gene Location: 144297-144914 bp Feature: domain Description: autotrans_barl Location: 144420-144861 bp Feature: domain Description: autotrans_barl Location: 144420-144861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), autotrans_barl (TIGR01414)

Seq: CACRWL010000002.1 (528002 bp)
Overview 1 RT 1: 1816-6060 bp Neighborhood of RT #1 [1816, 6060] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 1816-2718 bp Feature: domain Description: Macro_Appr_pase Location: 1834-2347 bp Feature: domain Description: Macro_Appr_pase Location: 1834 -234 7 bp Feature: gene Location: 2727-3311 bp Feature: domain Description: Caudo_TAP Location: 2943-3300 bp Feature: domain Description: Caudo_TAP Location: 294 3-3300 bp Feature: gene Location: 3424-4794 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3652-4258 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3652-4 258 bp Feature: gene Location: 4772-5476 bp Feature: domain Description: SLATT_5 Location: 4934-5444 bp Feature: domain Description: SLATT_5 Location: 4 934 -54 4 4 bp Feature: gene Location: 5884-6060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)