myRT

myRT report for GCA_902729365.1_S613295_spades

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Seq: CACVCD010000015.1 (62448 bp)
Overview 1 RT 1: 15885-20717 bp Neighborhood of RT #1 [15885, 20719] PlsC TrmN6 GIY-YIG_UPF0213 RVT-GII group_II_RT_mat COG4708 Feature: gene Location: 15885-16625 bp Feature: domain Description: PlsC Location: 15888-16476 bp Feature: domain Description: PlsC Location: 1 5888-1 6476 bp Feature: gene Location: 16710-17741 bp Feature: domain Description: TrmN6 Location: 16740-17466 bp Feature: domain Description: TrmN6 Location: 1 6740-1 7466 bp Feature: domain Description: GIY-YIG_UPF0213 Location: 17496-17691 bp Feature: domain Description: GIY-YIG_UPF021 3 Location: 1 7496-1 7691 bp Feature: gene Location: 18414-19112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18417-18975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 841 7-1 8975 bp Feature: gene Location: 19121-19474 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 19262-19466 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 9262-1 9466 bp Feature: gene Location: 20093-20719 bp Feature: domain Description: COG4708 Location: 20198-20717 bp Feature: domain Description: COG4708 Location: 201 98-2071 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PlsC (smart00563), TrmN6 (COG4123), GIY-YIG_UPF0213 (cd10456), RVT-GII, group_II_RT_mat (TIGR04416), COG4708 (Uncharacterized membrane protein )

Seq: CACVCD010000011.1 (72999 bp)
Overview 1 RT 1: 9819-13565 bp Neighborhood of RT #1 [9819, 13960] OmpR BaeS RVT-GII PRK00153 HTH_TipAL-Mta Feature: gene Location: 9819-10484 bp Feature: domain Description: OmpR Location: 9828-10464 bp Feature: domain Description: OmpR Location: 982 8-10464 bp Feature: gene Location: 10663-11877 bp Feature: domain Description: BaeS Location: 10891-11764 bp Feature: domain Description: BaeS Location: 10891-11764 bp Feature: gene Location: 12032-12196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12038-12173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 038-12 173 bp Feature: gene Location: 13038-13337 bp Feature: domain Description: PRK00153 Location: 13041-13329 bp Feature: domain Description: PRK00153 Location: 13041-1332 9 bp Feature: gene Location: 13376-13960 bp Feature: domain Description: HTH_TipAL-Mta Location: 13382-13565 bp Feature: domain Description: HTH_TipAL-Mta Location: 13382 -13565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), BaeS (COG0642), RVT-GII, PRK00153 (YbaB/EbfC family nucleoid-associated protein), HTH_TipAL-Mta (cd01106)

Seq: CACVCD010000009.1 (74698 bp)
Overview 1 RT 1: 57860-67054 bp Neighborhood of RT #1 [57860, 67449] KOG1000 RVT-GII Intron_maturas2 HNHc COG4646 N6_Mtase Feature: gene Location: 57860-58159 bp Feature: gene Location: 58230-59573 bp Feature: domain Description: KOG1000 Location: 58509-58824 bp Feature: domain Description: KOG1000 Location: 58509-58824 bp Feature: gene Location: 59711-61489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59972-60764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59972-60764 bp Feature: domain Description: Intron_maturas2 Location: 60869-61100 bp Feature: domain Description: Intron_maturas2 Location: 60869-61100 bp Feature: domain Description: HNHc Note: nucleases Location: 61265-61451 bp Feature: domain Description: HNHc Note: nucleases Location: 61265-61451 bp Feature: gene Location: 61987-64359 bp Feature: domain Description: COG4646 Location: 62092-64216 bp Feature: domain Description: COG4646 Location: 62092-64216 bp Feature: gene Location: 64450-67449 bp Feature: domain Description: N6_Mtase Location: 66463-67054 bp Feature: domain Description: N6_Mtase Location: 66463 -67054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), COG4646 (Adenine-specific DNA methylase, N12 class ), N6_Mtase (pfam02384)