myRT

myRT report for GCA_902757775.1_Rumen_uncultured_genome_RUG10295

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Seq: CACVWF010000046.1 (2623 bp)
Overview 1 RT 1: 65-2615 bp Neighborhood of RT #1 [65, 2620] DDE_5 RVT-GII Feature: gene Location: 65-1504 bp Feature: domain Description: DDE_5 Location: 221-845 bp Feature: domain Description: DDE_5 Location: 221 -845 bp Feature: gene Location: 1879-2034 bp Feature: gene Location: 2117-2620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2282-2615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2282-261 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII

Seq: CACVWF010000010.1 (191655 bp)
Overview 1 RT 1: 83291-87767 bp Neighborhood of RT #1 [83291, 87847] Succinoglycan_BP_ExoA RVT-UG26 PRK00024 MPP_YbbF-LpxH Feature: gene Location: 83291-84385 bp Feature: domain Description: Succinoglycan_BP_ExoA Location: 83300-84041 bp Feature: domain Description: Succinoglycan_BP_ExoA Location: 83300-84041 bp Feature: gene Location: 84477-84986 bp Feature: gene Location: 85135-86343 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 85336-85954 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 85336-85954 bp Feature: gene Location: 86351-87037 bp Feature: domain Description: PRK00024 Location: 86366-87032 bp Feature: domain Description: PRK0002 4 Location: 86366-87032 bp Feature: gene Location: 87083-87847 bp Feature: domain Description: MPP_YbbF-LpxH Location: 87101-87767 bp Feature: domain Description: MPP_YbbF-LpxH Location: 87101-87767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Succinoglycan_BP_ExoA (cd02525), RVT-UG26, PRK00024 (DNA repair protein RadC), MPP_YbbF-LpxH (cd07398)

Seq: CACVWF010000005.1 (137539 bp)
Overview 1 RT 1: 107410-111942 bp Neighborhood of RT #1 [107410, 112538] TPR_12 TPR_12 TPR_12 RVT-Retrons TIR-like Feature: gene Location: 107410-108972 bp Feature: domain Description: TPR_12 Location: 107707-107911 bp Feature: domain Description: TPR_12 Location: 107707-107911 bp Feature: domain Description: TPR_12 Location: 107947-108136 bp Feature: domain Description: TPR_12 Location: 107947-10813 6 bp Feature: domain Description: TPR_12 Location: 108175-108355 bp Feature: domain Description: TPR_12 Location: 108175-1083 55 bp Feature: gene Location: 109508-109756 bp Feature: gene Location: 109776-110642 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109962-110472 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109962-110472 bp Feature: gene Location: 110675-111493 bp Feature: gene Location: 111591-112538 bp Feature: domain Description: TIR-like Location: 111603-111942 bp Feature: domain Description: TIR-like Location: 111603 -111942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), RVT-Retrons, TIR-like (pfam10137)