myRT

myRT report for GCA_902761935.1_Rumen_uncultured_genome_RUG10709

Download annotations/find similar RTs

Seq: CACWMH010000020.1 (41272 bp)
Overview 1 RT 1: 21089-26430 bp Neighborhood of RT #1 [21089, 26438] COG3537 HAD_PPase RVT-UG26 DMT_6 Feature: gene Location: 21089-23422 bp Feature: domain Description: COG3537 Location: 21164-23414 bp Feature: domain Description: COG3537 Location: 21 1 64-2341 4 bp Feature: gene Location: 23427-24080 bp Feature: domain Description: HAD_PPase Location: 23433-24063 bp Feature: domain Description: HAD_PPase Location: 23433-24063 bp Feature: gene Location: 24113-25303 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 24302-24917 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 24302-2491 7 bp Feature: gene Location: 25473-26012 bp Feature: gene Location: 26067-26438 bp Feature: domain Description: DMT_6 Location: 26088-26430 bp Feature: domain Description: DMT_6 Location: 26088-26430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3537 (Putative alpha-1,2-mannosidase ), HAD_PPase (cd07509), RVT-UG26, DMT_6 (pfam04342)

Seq: CACWMH010000002.1 (114650 bp)
Overview 1 RT 1: 12335-18395 bp Neighborhood of RT #1 [12335, 18424] DEXXQc_Upf1-like DEXXQc_Upf1-like DNA2 RVT-Retrons WG_beta_rep WG_beta_rep WYL Feature: gene Location: 12335-14041 bp Feature: domain Description: DEXXQc_Upf1-like Location: 12950-13103 bp Feature: domain Description: DEXXQc_Upf1-like Location: 12 950-13103 bp Feature: domain Description: DEXXQc_Upf1-like Location: 13268-13394 bp Feature: domain Description: DEXXQc_Upf1-like Location: 132 68-13394 bp Feature: domain Description: DNA2 Location: 13721-13985 bp Feature: domain Description: DNA2 Location: 1372 1-13985 bp Feature: gene Location: 14518-14646 bp Feature: gene Location: 14781-16454 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15045-15690 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15045-15690 bp Feature: gene Location: 16761-17267 bp Feature: domain Description: WG_beta_rep Location: 16821-16908 bp Feature: domain Description: WG_beta_rep Location: 1682 1-16908 bp Feature: domain Description: WG_beta_rep Location: 16944-17013 bp Feature: domain Description: WG_beta_rep Location: 16944-17013 bp Feature: gene Location: 17384-18424 bp Feature: domain Description: WYL Location: 17819-18395 bp Feature: domain Description: WYL Location: 17819-18395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXXQc_Upf1-like (cd17934), DNA2 (COG1112), RVT-Retrons, WG_beta_rep (pfam14903), WYL (pfam13280)

Seq: CACWMH010000072.1 (2094 bp)
Overview 1 RT 1: 167-1914 bp Neighborhood of RT #1 [167, 1914] RVT-GII GIIM RVT-GII Feature: gene Location: 167-985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170-533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170-53 3 bp Feature: domain Description: GIIM Note: maturase Location: 584-815 bp Feature: domain Description: GIIM Note: maturase Location: 584-815 bp Feature: gene Location: 986-1441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1190-1436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1190-143 6 bp Feature: gene Location: 1513-1914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CACWMH010000069.1 (3570 bp)
Overview 1 RT 1: 2-3569 bp Neighborhood of RT #1 [2, 3569] DUF1998 RVT-GII Feature: gene Location: 2-796 bp Feature: domain Description: DUF1998 Location: 422-671 bp Feature: domain Description: DUF1998 Location: 4 22-671 bp Feature: gene Location: 1033-1245 bp Feature: gene Location: 1387-2667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1636-2299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1636-2299 bp Feature: gene Location: 2391-3569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1998 (pfam09369), RVT-GII