myRT

myRT report for GCA_902762265.1_Rumen_uncultured_genome_RUG10741

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Seq: CACWNO010000475.1 (2426 bp)
Overview 1 RT 1: 114-2188 bp Neighborhood of RT #1 [114, 2292] Cas2_I_II_III cas1_HMARI RVT-UNC Feature: gene Location: 114-377 bp Feature: domain Description: Cas2_I_II_III Location: 123-327 bp Feature: domain Description: Cas2_I_II_III Location: 1 23-327 bp Feature: gene Location: 513-1175 bp Feature: domain Description: cas1_HMARI Location: 516-1125 bp Feature: domain Description: cas1 _HMARI Location: 51 6-1 1 25 bp Feature: gene Location: 1369-2292 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1576-2188 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 576-21 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), cas1_HMARI (TIGR03641), RVT-GII/RVT-CRISPR/RVT-UG11(RVT-UNC)

Seq: CACWNO010000270.1 (3064 bp)
Overview 1 RT 1: 65-2120 bp Neighborhood of RT #1 [65, 2233] RVT-GII HNHc Feature: gene Location: 65-295 bp Feature: gene Location: 374-2233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 674-1412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 674-1412 bp Feature: domain Description: HNHc Note: nucleases Location: 1985-2120 bp Feature: domain Description: HNHc Note: nucleases Location: 1985-2 12 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: CACWNO010000168.1 (4326 bp)
Overview 1 RT 1: 269-4319 bp Neighborhood of RT #1 [269, 4324] MoxR RVT-GII HNHc AAA_5 Feature: gene Location: 269-1222 bp Feature: domain Description: MoxR Location: 1097-1211 bp Feature: domain Description: MoxR Location: 1097-1211 bp Feature: gene Location: 1896-3764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2196-2934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2196-293 4 bp Feature: domain Description: HNHc Note: nucleases Location: 3510-3642 bp Feature: domain Description: HNHc Note: nucleases Location: 3 510-3 642 bp Feature: gene Location: 3941-4324 bp Feature: domain Description: AAA_5 Location: 4070-4319 bp Feature: domain Description: AAA_5 Location: 4070-43 19 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), RVT-GII, HNHc (smart00507), AAA_5 (pfam07728)

Seq: CACWNO010000319.1 (4013 bp)
Overview 1 RT 1: 241-3367 bp Neighborhood of RT #1 [241, 4011] HTH_XRE RVT-Retrons bMG6 bMG6 Feature: gene Location: 241-549 bp Feature: domain Description: HTH_XRE Location: 250-415 bp Feature: domain Description: HTH_XRE Location: 250-4 15 bp Feature: gene Location: 530-1546 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 713-1253 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 713-1253 bp Feature: gene Location: 1690-4011 bp Feature: domain Description: bMG6 Location: 2098-2194 bp Feature: domain Description: bMG6 Location: 2098-2194 bp Feature: domain Description: bMG6 Location: 3292-3367 bp Feature: domain Description: bMG6 Location: 3292-3367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, bMG6 (pfam17962)