myRT

myRT report for GCA_902762375.1_Rumen_uncultured_genome_RUG10751

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Seq: CACWNY010000119.1 (2797 bp)
Overview 1 RT 1: 3-2300 bp Neighborhood of RT #1 [3, 2383] RVT-DGRs cas1_HMARI RVT-UNC DUF2735 DUF2735 Feature: gene Location: 3-1103 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9-144 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9-1 44 bp Feature: domain Description: cas1_HMARI Location: 249-1098 bp Feature: domain Description: cas1 _HMARI Location: 249-1 098 bp Feature: gene Location: 1148-1726 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1256-1694 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 256-1 694 bp Feature: gene Location: 1979-2383 bp Feature: domain Description: DUF2735 Location: 2186-2228 bp Feature: domain Description: DUF2735 Location: 21 86-2228 bp Feature: domain Description: DUF2735 Location: 2246-2300 bp Feature: domain Description: DUF2735 Location: 2246-2300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, cas1_HMARI (TIGR03641), RVT-GII/RVT-CRISPR/RVT-UG26(RVT-UNC), DUF2735 (pfam10931)

Seq: CACWNY010000073.1 (4434 bp)
Overview 1 RT 1: 44-4413 bp Neighborhood of RT #1 [44, 4433] TraG-D_C group_II_RT_mat HNHc RVT-GII VirD4 Feature: gene Location: 44-643 bp Feature: domain Description: TraG-D_C Location: 50-344 bp Feature: domain Description: TraG-D_C Location: 50-344 bp Feature: gene Location: 776-1666 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 779-1097 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 779-1097 bp Feature: domain Description: HNHc Note: nucleases Location: 1457-1556 bp Feature: domain Description: HNHc Note: nucleases Location: 1457-1556 bp Feature: gene Location: 1700-2644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2009-2639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 009-2 639 bp Feature: gene Location: 3318-4433 bp Feature: domain Description: VirD4 Location: 3372-4413 bp Feature: domain Description: VirD4 Location: 3372 -4413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), group_II_RT_mat (TIGR04416), HNHc (smart00507), RVT-GII, VirD4 (COG3505)