myRT

myRT report for GCA_902763925.1_Rumen_uncultured_genome_RUG10910

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Seq: CACWUD010000086.1 uncultured Lachnospiraceae bacterium isolate RUG10910 genome assembly, contig: RUG10910_asm_86, whole genome shotgun sequence (7293 bp)
Overview 1 RT 1: 2670-6558 bp Neighborhood of RT #1 [2670, 6761] PepP COG5263 RVT-UG26 Atl1 WrbA Feature: gene Location: 2670-3740 bp Feature: domain Description: PepP Location: 2676-3726 bp Feature: domain Description: PepP Location: 2676-3726 bp Feature: gene Location: 3781-4389 bp Feature: domain Description: COG5263 Location: 3862-4036 bp Feature: domain Description: COG5263 Location: 3862-4036 bp Feature: gene Location: 4438-5643 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 4633-5251 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 4633-5251 bp Feature: gene Location: 5856-6164 bp Feature: domain Description: Atl1 Location: 5880-6153 bp Feature: domain Description: Atl1 Location: 5880-61 53 bp Feature: gene Location: 6165-6761 bp Feature: domain Description: WrbA Location: 6168-6558 bp Feature: domain Description: WrbA Location: 61 68-6558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PepP (COG0006), COG5263 (Glucan-binding domain (YG repeat) ), RVT-UG26, Atl1 (COG3695), WrbA (COG0655)

Seq: CACWUD010000213.1 uncultured Lachnospiraceae bacterium isolate RUG10910 genome assembly, contig: RUG10910_asm_213, whole genome shotgun sequence (3200 bp)
Overview 1 RT 1: 158-2871 bp Neighborhood of RT #1 [158, 3197] RVT-GII GIIM HTH_3 Feature: gene Location: 158-721 bp Feature: gene Location: 773-2182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1094-1718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1094-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1775-1991 bp Feature: domain Description: GIIM Note: maturase Location: 1775-1991 bp Feature: gene Location: 2235-2375 bp Feature: gene Location: 2703-3197 bp Feature: domain Description: HTH_3 Location: 2727-2871 bp Feature: domain Description: HTH_3 Location: 2 72 7-2 871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_3 (pfam01381)