myRT

myRT report for GCA_902764235.1_Rumen_uncultured_genome_RUG10944

Download annotations/find similar RTs

Seq: CACWVH010000049.1 uncultured Ruminococcus sp. isolate RUG10944 genome assembly, contig: RUG10944_asm_49, whole genome shotgun sequence (14568 bp)
Overview 1 RT 1: 10865-14091 bp Neighborhood of RT #1 [10865, 14444] RpoD YpsA RVT-GII Feature: gene Location: 10865-11923 bp Feature: domain Description: RpoD Location: 11135-11906 bp Feature: domain Description: RpoD Location: 1 1 1 35-1 1 906 bp Feature: gene Location: 12120-12569 bp Feature: domain Description: YpsA Location: 12168-12351 bp Feature: domain Description: YpsA Location: 1 21 68-1 2351 bp Feature: gene Location: 13158-14444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13407-14091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3407-1 4091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoD (COG0568), YpsA, RVT-GII

Seq: CACWVH010000094.1 uncultured Ruminococcus sp. isolate RUG10944 genome assembly, contig: RUG10944_asm_94, whole genome shotgun sequence (10325 bp)
Overview 1 RT 1: 165-5076 bp Neighborhood of RT #1 [165, 5096] XRE RVT-GII YkfC GIIM COG1768 PRK09225 Feature: gene Location: 165-362 bp Feature: domain Description: XRE Location: 168-357 bp Feature: domain Description: XRE Location: 168-357 bp Feature: gene Location: 363-878 bp Feature: gene Location: 1115-2305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1316-1493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1316-1493 bp Feature: domain Description: YkfC Location: 1508-1835 bp Feature: domain Description: YkfC Location: 1508-1835 bp Feature: domain Description: GIIM Note: maturase Location: 1880-2111 bp Feature: domain Description: GIIM Note: maturase Location: 1880-2 111 bp Feature: gene Location: 2858-3547 bp Feature: domain Description: COG1768 Location: 2861-3542 bp Feature: domain Description: COG1768 Location: 2 861-3542 bp Feature: gene Location: 3591-5096 bp Feature: domain Description: PRK09225 Location: 3594-5076 bp Feature: domain Description: PRK092 2 5 Location: 3594-5076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XRE (COG1476), RVT-GII, YkfC (COG3344), GIIM (pfam08388), COG1768 (Predicted phosphohydrolase ), PRK09225 (threonine synthase; Validated)

Seq: CACWVH010000205.1 uncultured Ruminococcus sp. isolate RUG10944 genome assembly, contig: RUG10944_asm_205, whole genome shotgun sequence (6750 bp)
Overview 1 RT 1: 1134-6497 bp Neighborhood of RT #1 [1134, 6514] KOG1000 COG4646 RVT-GII HNHc RVT-GII COG4646 Feature: gene Location: 1134-2180 bp Feature: domain Description: KOG1000 Location: 1221-1611 bp Feature: domain Description: KOG1000 Location: 1221-1611 bp Feature: gene Location: 2188-3003 bp Feature: domain Description: COG4646 Location: 2191-2758 bp Feature: domain Description: COG4646 Location: 2191-2758 bp Feature: gene Location: 3220-4356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3265-3469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 265-3 469 bp Feature: domain Description: HNHc Note: nucleases Location: 4108-4279 bp Feature: domain Description: HNHc Note: nucleases Location: 4108-4279 bp Feature: gene Location: 4400-5080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4658-5069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4658-5069 bp Feature: gene Location: 5235-5504 bp Feature: gene Location: 5819-6514 bp Feature: domain Description: COG4646 Location: 5825-6497 bp Feature: domain Description: COG4646 Location: 5825-6497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, HNHc (smart00507)