myRT

myRT report for GCA_902765165.1_Rumen_uncultured_genome_RUG11032

Download annotations/find similar RTs

Seq: CACWYT010000021.1 uncultured Ruminococcus sp. isolate RUG11032 genome assembly, contig: RUG11032_asm_21, whole genome shotgun sequence (27806 bp)
Overview 1 RT 1: 23130-27395 bp Neighborhood of RT #1 [23130, 27748] HSDR_N HsdM HsdM Phage_integrase RVT-GII Feature: gene Location: 23130-25451 bp Feature: domain Description: HSDR_N Location: 23253-23430 bp Feature: domain Description: HSDR_N Location: 23253-23430 bp Feature: domain Description: HsdM Location: 23835-24378 bp Feature: domain Description: HsdM Location: 23835-24378 bp Feature: domain Description: HsdM Location: 24435-24915 bp Feature: domain Description: HsdM Location: 24435-2491 5 bp Feature: gene Location: 25841-26233 bp Feature: domain Description: Phage_integrase Location: 25871-26150 bp Feature: domain Description: Phage_integrase Location: 25871 -261 50 bp Feature: gene Location: 26447-27748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26702-27395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26702-27395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HSDR_N (pfam04313), HsdM (COG0286), Phage_integrase (pfam00589), RVT-GII

Seq: CACWYT010000061.1 uncultured Ruminococcus sp. isolate RUG11032 genome assembly, contig: RUG11032_asm_61, whole genome shotgun sequence (7958 bp)
Overview 1 RT 1: 87-5572 bp Neighborhood of RT #1 [87, 6003] RVT-GII GIIM RVT-GII FN3 FN3 FN3 FN3 FN3 Feature: gene Location: 87-1121 bp Feature: gene Location: 1330-1539 bp Feature: gene Location: 1739-2959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973-2510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973-2 510 bp Feature: domain Description: GIIM Note: maturase Location: 2564-2786 bp Feature: domain Description: GIIM Note: maturase Location: 2 564-2 786 bp Feature: gene Location: 2770-3411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3043-3232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3043-32 32 bp Feature: gene Location: 3722-3973 bp Feature: gene Location: 4180-6003 bp Feature: domain Description: FN3 Location: 4288-4492 bp Feature: domain Description: FN3 Location: 42 88-4492 bp Feature: domain Description: FN3 Location: 4549-4765 bp Feature: domain Description: FN3 Location: 4549-4765 bp Feature: domain Description: FN3 Location: 4822-5029 bp Feature: domain Description: FN3 Location: 482 2 -502 9 bp Feature: domain Description: FN3 Location: 5089-5293 bp Feature: domain Description: FN3 Location: 5089-52 93 bp Feature: domain Description: FN3 Location: 5377-5572 bp Feature: domain Description: FN3 Location: 5377-5572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FN3 (smart00060)