myRT

myRT report for GCA_902765315.1_Rumen_uncultured_genome_RUG11054

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Seq: CACWZJ010000031.1 uncultured Ruminococcus sp. isolate RUG11054 genome assembly, contig: RUG11054_asm_31, whole genome shotgun sequence (32767 bp)
Overview 1 RT 1: 18630-30745 bp Neighborhood of RT #1 [18630, 31644] NT_KNTase_like LPD25 YodL YtxK COG4646 RVT-GII HNHc COG4646 HELICc Feature: gene Location: 18630-26462 bp Feature: domain Description: NT_KNTase_like Location: 20673-20880 bp Feature: domain Description: NT_KNTase_like Location: 20673-20880 bp Feature: domain Description: LPD25 Location: 22014-22338 bp Feature: domain Description: LPD25 Location: 2201 4-22338 bp Feature: domain Description: YodL Location: 23577-23883 bp Feature: domain Description: YodL Location: 23577-23883 bp Feature: domain Description: YtxK Location: 24426-24843 bp Feature: domain Description: YtxK Location: 24426-24843 bp Feature: domain Description: COG4646 Location: 24924-26454 bp Feature: domain Description: COG4646 Location: 24924-26454 bp Feature: gene Location: 26933-27157 bp Feature: gene Location: 27187-29088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27505-28231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27505-28231 bp Feature: domain Description: HNHc Note: nucleases Location: 28792-28951 bp Feature: domain Description: HNHc Note: nucleases Location: 28792-28951 bp Feature: gene Location: 29109-29255 bp Feature: gene Location: 29119-31644 bp Feature: domain Description: COG4646 Location: 29251-30328 bp Feature: domain Description: COG4646 Location: 29251 -30328 bp Feature: domain Description: HELICc Location: 30385-30745 bp Feature: domain Description: HELICc Location: 30385-30745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NT_KNTase_like (cd05403), LPD25 (pfam18840), YodL (pfam14191), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, HNHc (smart00507), HELICc (smart00490)

Seq: CACWZJ010000041.1 uncultured Ruminococcus sp. isolate RUG11054 genome assembly, contig: RUG11054_asm_41, whole genome shotgun sequence (24437 bp)
Overview 1 RT 1: 3419-7228 bp Neighborhood of RT #1 [3419, 7228] PRK05427 RVT-GII GIIM Feature: gene Location: 3419-4015 bp Feature: domain Description: PRK05427 Location: 3629-3980 bp Feature: domain Description: PRK0542 7 Location: 362 9-3980 bp Feature: gene Location: 4153-4356 bp Feature: gene Location: 4552-5922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4891-5554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4891-5554 bp Feature: domain Description: GIIM Note: maturase Location: 5632-5857 bp Feature: domain Description: GIIM Note: maturase Location: 5632 -5857 bp Feature: gene Location: 6482-6847 bp Feature: gene Location: 7034-7228 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05427 (putative manganese-dependent inorganic pyrophosphatase; Provisional), RVT-GII, GIIM (pfam08388)

Seq: CACWZJ010000096.1 uncultured Ruminococcus sp. isolate RUG11054 genome assembly, contig: RUG11054_asm_96, whole genome shotgun sequence (5301 bp)
Overview 1 RT 1: 546-4236 bp Neighborhood of RT #1 [546, 4244] maj_tail_phi13 RVT-GII HNHc maj_tail_phi13 Feature: gene Location: 546-923 bp Feature: gene Location: 934-1341 bp Feature: domain Description: maj_tail_phi13 Location: 940-1294 bp Feature: domain Description: maj_tail_phi13 Location: 940-1294 bp Feature: gene Location: 1516-3381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1825-2563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1825-2563 bp Feature: domain Description: HNHc Note: nucleases Location: 3130-3262 bp Feature: domain Description: HNHc Note: nucleases Location: 3 13 0-3 262 bp Feature: gene Location: 3672-3809 bp Feature: gene Location: 4047-4244 bp Feature: domain Description: maj_tail_phi13 Location: 4071-4236 bp Feature: domain Description: maj_tail_phi13 Location: 4071-423 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), maj_tail_phi13 (TIGR01603)