myRT

myRT report for GCA_902765445.1_Rumen_uncultured_genome_RUG11064

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Seq: CACWZR010000011.1 uncultured Lachnospiraceae bacterium isolate RUG11064 genome assembly, contig: RUG11064_asm_11, whole genome shotgun sequence (71063 bp)
Overview 1 RT 1: 562-4721 bp Neighborhood of RT #1 [562, 4723] RVT-GII GIIM GdpP RplI Feature: gene Location: 562-1878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823-1516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823-1 51 6 bp Feature: domain Description: GIIM Note: maturase Location: 1579-1792 bp Feature: domain Description: GIIM Note: maturase Location: 1 579-1 792 bp Feature: gene Location: 2058-4112 bp Feature: domain Description: GdpP Location: 2133-4104 bp Feature: domain Description: GdpP Location: 21 33-41 04 bp Feature: gene Location: 4277-4723 bp Feature: domain Description: RplI Location: 4280-4721 bp Feature: domain Description: RplI Location: 4280-4721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GdpP (COG3887), RplI (COG0359)

Seq: CACWZR010000013.1 uncultured Lachnospiraceae bacterium isolate RUG11064 genome assembly, contig: RUG11064_asm_13, whole genome shotgun sequence (61342 bp)
Overview 1 RT 1: 25418-31690 bp Neighborhood of RT #1 [25418, 31767] DDE_Tnp_ISL3 COG2865 RVT-GII GIIM RVT-GII RVT-GII DUF3825 DUF3825 Feature: gene Location: 25418-26830 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 25964-26771 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 2 5964-2 6771 bp Feature: gene Location: 27143-27985 bp Feature: domain Description: COG2865 Location: 27200-27860 bp Feature: domain Description: COG2 865 Location: 2 72 00-2 7860 bp Feature: gene Location: 28412-29047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28418-28667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8418-2 8667 bp Feature: domain Description: GIIM Note: maturase Location: 28748-28967 bp Feature: domain Description: GIIM Note: maturase Location: 2 8748-2 8967 bp Feature: gene Location: 29078-29653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29282-29651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 82 -2 9651 bp Feature: gene Location: 29869-30012 bp Feature: gene Location: 30199-30366 bp Feature: gene Location: 30487-30885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30523-30721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3052 3-3072 1 bp Feature: gene Location: 31028-31321 bp Feature: domain Description: DUF3825 Location: 31043-31310 bp Feature: domain Description: DUF382 5 Location: 31043-31310 bp Feature: gene Location: 31381-31767 bp Feature: domain Description: DUF3825 Location: 31444-31690 bp Feature: domain Description: DUF382 5 Location: 31444-31690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-GII, GIIM (pfam08388), DUF3825 (pfam12873)

Seq: CACWZR010000026.1 uncultured Lachnospiraceae bacterium isolate RUG11064 genome assembly, contig: RUG11064_asm_26, whole genome shotgun sequence (112637 bp)
Overview 1 RT 1: 82485-87678 bp Neighborhood of RT #1 [82485, 87678] Cas_Cas1 Cas2_I_II_III RVT-CRISPR COG4951 Feature: gene Location: 82485-83651 bp Feature: domain Description: Cas_Cas1 Location: 82497-83343 bp Feature: domain Description: Cas_Cas1 Location: 82497-83 3 43 bp Feature: gene Location: 83658-83951 bp Feature: domain Description: Cas2_I_II_III Location: 83664-83907 bp Feature: domain Description: Cas2_I_II_III Location: 83 664-83 907 bp Feature: gene Location: 83971-86889 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 84181-84775 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 84181-84775 bp Feature: domain Description: COG4951 Location: 85567-86170 bp Feature: domain Description: COG4951 Location: 85567-86170 bp Feature: gene Location: 87024-87212 bp Feature: gene Location: 87490-87678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442), RVT-CRISPR, COG4951 (Uncharacterized protein )