myRT

myRT report for GCA_902769275.1_Rumen_uncultured_genome_RUG11461

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Seq: CACXOV010000040.1 uncultured Bacteroidia bacterium isolate RUG11461 genome assembly, contig: RUG11461_asm_40, whole genome shotgun sequence (15712 bp)
Overview 1 RT 1: 86-3657 bp Neighborhood of RT #1 [86, 3692] RVT-UG28b YhhQ Feature: gene Location: 86-235 bp Feature: gene Location: 280-1995 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 721-1498 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 721 -1 498 bp Feature: gene Location: 2330-2878 bp Feature: gene Location: 3054-3692 bp Feature: domain Description: YhhQ Location: 3084-3657 bp Feature: domain Description: YhhQ Location: 3084-3657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28b, YhhQ (COG1738)

Seq: CACXOV010000061.1 uncultured Bacteroidia bacterium isolate RUG11461 genome assembly, contig: RUG11461_asm_61, whole genome shotgun sequence (13627 bp)
Overview 1 RT 1: 3-8953 bp Neighborhood of RT #1 [3, 8958] COG3547 RVT-GII GIIM OMP_RagA_SusC SusD SusD_RagB Feature: gene Location: 3-953 bp Feature: domain Description: COG3547 Location: 90-822 bp Feature: domain Description: COG3547 Location: 90-82 2 bp Feature: gene Location: 1024-1290 bp Feature: gene Location: 1306-2574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1510-2167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1510-2 167 bp Feature: domain Description: GIIM Note: maturase Location: 2251-2470 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 51-2 470 bp Feature: gene Location: 3627-6851 bp Feature: domain Description: OMP_RagA_SusC Location: 3714-6846 bp Feature: domain Description: OMP_RagA_SusC Location: 3714-6846 bp Feature: gene Location: 6865-8958 bp Feature: domain Description: SusD Location: 7186-7591 bp Feature: domain Description: SusD Location: 7186-7591 bp Feature: domain Description: SusD_RagB Location: 7825-8953 bp Feature: domain Description: SusD_RagB Location: 782 5-8953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), OMP_RagA_SusC (TIGR04056), SusD (NF033071), SusD_RagB (pfam07980)