myRT

myRT report for GCA_902771185.1_Rumen_uncultured_genome_RUG11647

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Seq: CACXVY010000046.1 uncultured Lachnospiraceae bacterium isolate RUG11647 genome assembly, contig: RUG11647_asm_46, whole genome shotgun sequence (12304 bp)
Overview 1 RT 1: 1-5308 bp Neighborhood of RT #1 [1, 5319] T_den_put_tspse GIIM RVT-GII rpsA cmk PRK00087 Feature: gene Location: 1-450 bp Feature: domain Description: T_den_put_tspse Location: 55-367 bp Feature: domain Description: T_den_put_tspse Location: 55-367 bp Feature: gene Location: 655-1059 bp Feature: domain Description: GIIM Note: maturase Location: 679-880 bp Feature: domain Description: GIIM Note: maturase Location: 679-880 bp Feature: gene Location: 1013-2137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1448-2072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 448-2072 bp Feature: gene Location: 2559-3770 bp Feature: domain Description: rpsA Location: 2580-3672 bp Feature: domain Description: rpsA Location: 2580-3672 bp Feature: gene Location: 3748-5319 bp Feature: domain Description: cmk Location: 3754-4459 bp Feature: domain Description: cmk Location: 3754-4459 bp Feature: domain Description: PRK00087 Location: 4474-5308 bp Feature: domain Description: PRK00087 Location: 4474-5308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, T_den_put_tspse (TIGR01784), cmk (TIGR00017), PRK00087 (bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1), GIIM (pfam08388)

Seq: CACXVY010000143.1 uncultured Lachnospiraceae bacterium isolate RUG11647 genome assembly, contig: RUG11647_asm_143, whole genome shotgun sequence (7767 bp)
Overview 1 RT 1: 960-4774 bp Neighborhood of RT #1 [960, 4776] TniQ RVT-GII GIIM PRK09943 Feature: gene Location: 960-1280 bp Feature: domain Description: TniQ Location: 975-1149 bp Feature: domain Description: TniQ Location: 975-1149 bp Feature: gene Location: 1438-1743 bp Feature: gene Location: 1789-3186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2110-2734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 110-2 734 bp Feature: domain Description: GIIM Note: maturase Location: 2791-3004 bp Feature: domain Description: GIIM Note: maturase Location: 2 791-3004 bp Feature: gene Location: 3421-3672 bp Feature: gene Location: 4213-4776 bp Feature: domain Description: PRK09943 Location: 4246-4774 bp Feature: domain Description: PRK09943 Location: 42 46-4774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09943 (HTH-type transcriptional regulator PuuR), TniQ (pfam06527)

Seq: CACXVY010000157.1 uncultured Lachnospiraceae bacterium isolate RUG11647 genome assembly, contig: RUG11647_asm_157, whole genome shotgun sequence (3216 bp)
Overview 1 RT 1: 40-3177 bp Neighborhood of RT #1 [40, 3215] UgpA RVT-GII UgpA Feature: gene Location: 40-225 bp Feature: domain Description: UgpA Location: 73-208 bp Feature: domain Description: UgpA Location: 73 -208 bp Feature: gene Location: 327-2243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 639-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 9-13 83 bp Feature: gene Location: 2543-2887 bp Feature: gene Location: 2889-3215 bp Feature: domain Description: UgpA Location: 2895-3177 bp Feature: domain Description: UgpA Location: 2895-3 177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpA (COG1175), RVT-GII