myRT

myRT report for GCA_902772315.1_Rumen_uncultured_genome_RUG11752

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Seq: CACYAF010000075.1 uncultured bacterium isolate RUG11752 genome assembly, contig: RUG11752_asm_75, whole genome shotgun sequence (11599 bp)
Overview 1 RT 1: 5363-11510 bp Neighborhood of RT #1 [5363, 11596] HZS_alpha YfmG XynB_like RVT-DGRs HRDC Feature: gene Location: 5363-8221 bp Feature: domain Description: HZS_alpha Location: 6230-6509 bp Feature: domain Description: HZS_alpha Location: 6230-6509 bp Feature: domain Description: YfmG Location: 7403-8201 bp Feature: domain Description: YfmG Location: 7403-8201 bp Feature: gene Location: 8366-10030 bp Feature: domain Description: XynB_like Location: 8918-9557 bp Feature: domain Description: XynB_like Location: 891 8-9557 bp Feature: gene Location: 10587-11129 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10797-11022 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 0797-1 1 022 bp Feature: gene Location: 11126-11596 bp Feature: domain Description: HRDC Location: 11321-11510 bp Feature: domain Description: HRDC Location: 1 1 321 -1 1 51 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HRDC (smart00341), HZS_alpha (pfam18582), YfmG (COG1262), XynB_like (cd01833)

Seq: CACYAF010000126.1 uncultured bacterium isolate RUG11752 genome assembly, contig: RUG11752_asm_126, whole genome shotgun sequence (8217 bp)
Overview 1 RT 1: 166-5995 bp Neighborhood of RT #1 [166, 6549] RVT-GII GIIM YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x RhsA Feature: gene Location: 166-357 bp Feature: gene Location: 429-1802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 789-1437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 789-1437 bp Feature: domain Description: GIIM Note: maturase Location: 1512-1725 bp Feature: domain Description: GIIM Note: maturase Location: 1512 -172 5 bp Feature: gene Location: 2281-2460 bp Feature: gene Location: 2608-6549 bp Feature: domain Description: YD_repeat_2x Location: 3826-3922 bp Feature: domain Description: YD_repeat_2 x Location: 382 6-392 2 bp Feature: domain Description: YD_repeat_2x Location: 4039-4156 bp Feature: domain Description: YD_repeat_2 x Location: 4039-4156 bp Feature: domain Description: YD_repeat_2x Location: 4162-4264 bp Feature: domain Description: YD_repeat_2 x Location: 4162 -42 64 bp Feature: domain Description: YD_repeat_2x Location: 4300-4414 bp Feature: domain Description: YD_repeat_2 x Location: 4300-4414 bp Feature: domain Description: YD_repeat_2x Location: 4426-4522 bp Feature: domain Description: YD_repeat_2 x Location: 442 6-452 2 bp Feature: domain Description: YD_repeat_2x Location: 4624-4720 bp Feature: domain Description: YD_repeat_2 x Location: 462 4-472 0 bp Feature: domain Description: YD_repeat_2x Location: 4747-4846 bp Feature: domain Description: YD_repeat_2 x Location: 4747-4846 bp Feature: domain Description: YD_repeat_2x Location: 4885-4972 bp Feature: domain Description: YD_repeat_2 x Location: 4885-4972 bp Feature: domain Description: YD_repeat_2x Location: 5140-5239 bp Feature: domain Description: YD_repeat_2 x Location: 5140-52 39 bp Feature: domain Description: YD_repeat_2x Location: 5266-5350 bp Feature: domain Description: YD_repeat_2 x Location: 52 66-5350 bp Feature: domain Description: RhsA Location: 5854-5995 bp Feature: domain Description: RhsA Location: 5854-5995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YD_repeat_2x (TIGR01643), RhsA (COG3209), RVT-GII, GIIM (pfam08388)