myRT

myRT report for GCA_902773675.1_Rumen_uncultured_genome_RUG11890

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Seq: CACYFN010000010.1 uncultured Erysipelotrichaceae bacterium isolate RUG11890 genome assembly, contig: RUG11890_asm_10, whole genome shotgun sequence (27613 bp)
Overview 1 RT 1: 21796-26794 bp Neighborhood of RT #1 [21796, 26794] PRK00996 YjgR YjgR RVT-DGRs RVT-DGRs Avd_like Feature: gene Location: 21796-22752 bp Feature: domain Description: PRK00996 Location: 21802-22738 bp Feature: domain Description: PRK00996 Location: 21 802-22738 bp Feature: gene Location: 22761-24515 bp Feature: domain Description: YjgR Location: 22980-23265 bp Feature: domain Description: YjgR Location: 22980-23265 bp Feature: domain Description: YjgR Location: 24177-24510 bp Feature: domain Description: YjgR Location: 241 77-2451 0 bp Feature: gene Location: 24992-25366 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24995-25151 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24995-251 51 bp Feature: gene Location: 25419-26066 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25581-26040 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25581 -26040 bp Feature: gene Location: 26071-26409 bp Feature: domain Description: Avd_like Location: 26095-26392 bp Feature: domain Description: Avd_like Location: 26095-26392 bp Feature: gene Location: 26402-26794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00996 (ribonuclease HIII; Provisional), YjgR (COG0433), RVT-DGRs, Avd_like (cd16376)

Seq: CACYFN010000027.1 uncultured Erysipelotrichaceae bacterium isolate RUG11890 genome assembly, contig: RUG11890_asm_27, whole genome shotgun sequence (40021 bp)
Overview 1 RT 1: 7179-13143 bp Neighborhood of RT #1 [7179, 14732] BaeS OmpR RVT-GII PykF exp_by_SipW_IV exp_by_SipW_IV Feature: gene Location: 7179-8444 bp Feature: domain Description: BaeS Location: 7560-8430 bp Feature: domain Description: BaeS Location: 7560-8430 bp Feature: gene Location: 8441-9118 bp Feature: domain Description: OmpR Location: 8450-9107 bp Feature: domain Description: OmpR Location: 8450-9107 bp Feature: gene Location: 9209-10480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9458-10118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9458-10118 bp Feature: gene Location: 11046-12524 bp Feature: domain Description: PykF Location: 11070-12480 bp Feature: domain Description: PykF Location: 11070-12 480 bp Feature: gene Location: 12597-14732 bp Feature: domain Description: exp_by_SipW_IV Location: 12609-12870 bp Feature: domain Description: exp_by_SipW_IV Location: 12 609-12 870 bp Feature: domain Description: exp_by_SipW_IV Location: 12921-13143 bp Feature: domain Description: exp_by_SipW_IV Location: 12 92 1-13143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), OmpR (COG0745), RVT-GII, PykF (COG0469), exp_by_SipW_IV (TIGR04090)

Seq: CACYFN010000056.1 uncultured Erysipelotrichaceae bacterium isolate RUG11890 genome assembly, contig: RUG11890_asm_56, whole genome shotgun sequence (6386 bp)
Overview 1 RT 1: 1765-6280 bp Neighborhood of RT #1 [1765, 6285] RVT-GII GIIM scpA Feature: gene Location: 1765-2223 bp Feature: gene Location: 2762-2935 bp Feature: gene Location: 3463-4782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3712-4327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 712-43 27 bp Feature: domain Description: GIIM Note: maturase Location: 4384-4591 bp Feature: domain Description: GIIM Note: maturase Location: 43 84-4591 bp Feature: gene Location: 5569-6285 bp Feature: domain Description: scpA Location: 5575-6280 bp Feature: domain Description: scpA Location: 5575-6280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), scpA (PRK00478)

Seq: CACYFN010000059.1 uncultured Erysipelotrichaceae bacterium isolate RUG11890 genome assembly, contig: RUG11890_asm_59, whole genome shotgun sequence (9958 bp)
Overview 1 RT 1: 5162-9546 bp Neighborhood of RT #1 [5162, 9546] DUF4238 DUF4379 DUF4379 DUF4379 DUF4379 DUF4379 DUF4379 RVT-Retrons Feature: gene Location: 5162-6250 bp Feature: domain Description: DUF4238 Location: 5183-5939 bp Feature: domain Description: DUF4 238 Location: 5183-5939 bp Feature: gene Location: 6277-7938 bp Feature: domain Description: DUF4379 Location: 6319-6472 bp Feature: domain Description: DUF4 379 Location: 6319-64 72 bp Feature: domain Description: DUF4379 Location: 6523-6679 bp Feature: domain Description: DUF4 379 Location: 6523-6679 bp Feature: domain Description: DUF4379 Location: 7135-7294 bp Feature: domain Description: DUF4 379 Location: 7135-7294 bp Feature: domain Description: DUF4379 Location: 7345-7501 bp Feature: domain Description: DUF4 379 Location: 734 5-7501 bp Feature: domain Description: DUF4379 Location: 7552-7708 bp Feature: domain Description: DUF4 379 Location: 7552-7708 bp Feature: domain Description: DUF4379 Location: 7759-7921 bp Feature: domain Description: DUF4 379 Location: 7759-7921 bp Feature: gene Location: 8079-9305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8349-8943 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 834 9-894 3 bp Feature: gene Location: 9298-9546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4238 (pfam14022), DUF4379 (pfam14311), RVT-Retrons

Seq: CACYFN010000065.1 uncultured Erysipelotrichaceae bacterium isolate RUG11890 genome assembly, contig: RUG11890_asm_65, whole genome shotgun sequence (9515 bp)
Overview 1 RT 1: 1630-4186 bp Neighborhood of RT #1 [1630, 4212] MutS_I Avd_like RVT-DGRs DUF3792 Feature: gene Location: 1630-2001 bp Feature: domain Description: MutS_I Location: 1636-1807 bp Feature: domain Description: MutS_I Location: 1636-1807 bp Feature: gene Location: 1994-2332 bp Feature: domain Description: Avd_like Location: 2018-2315 bp Feature: domain Description: Avd_like Location: 2018-2315 bp Feature: gene Location: 2412-3407 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2499-3195 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2499-3195 bp Feature: gene Location: 3430-3711 bp Feature: gene Location: 3844-4212 bp Feature: domain Description: DUF3792 Location: 3856-4186 bp Feature: domain Description: DUF3792 Location: 385 6-4186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MutS_I (pfam01624), Avd_like (cd16376), RVT-DGRs, DUF3792 (pfam12670)