myRT

myRT report for GCA_902774935.1_Rumen_uncultured_genome_RUG12021

Download annotations/find similar RTs

Seq: CACYKK010000041.1 uncultured Lachnospiraceae bacterium isolate RUG12021 genome assembly, contig: RUG12021_asm_41, whole genome shotgun sequence (52188 bp)
Overview 1 RT 1: 44404-49206 bp Neighborhood of RT #1 [44404, 49253] RVT-CRISPR COG4951 Cas2_I_II_III Cas1_I-II-III Feature: gene Location: 44404-44616 bp Feature: gene Location: 44651-44914 bp Feature: gene Location: 44935-47754 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 45142-45745 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 451 42-45745 bp Feature: domain Description: COG4951 Location: 46366-46960 bp Feature: domain Description: COG4951 Location: 46366-46960 bp Feature: gene Location: 47899-48243 bp Feature: domain Description: Cas2_I_II_III Location: 47965-48199 bp Feature: domain Description: Cas2_I_II_III Location: 47965-481 99 bp Feature: gene Location: 48261-49253 bp Feature: domain Description: Cas1_I-II-III Location: 48273-49206 bp Feature: domain Description: Cas1 _I-II-III Location: 48273-49206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, COG4951 (Uncharacterized protein ), Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656)

Seq: CACYKK010000100.1 uncultured Lachnospiraceae bacterium isolate RUG12021 genome assembly, contig: RUG12021_asm_100, whole genome shotgun sequence (10364 bp)
Overview 1 RT 1: 647-4782 bp Neighborhood of RT #1 [647, 4782] RVT-UG2 DUF2971 Feature: gene Location: 647-1363 bp Feature: gene Location: 1585-1716 bp Feature: gene Location: 1865-3196 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2081-2912 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2 081-2 912 bp Feature: gene Location: 3510-4490 bp Feature: domain Description: DUF2971 Location: 3984-4296 bp Feature: domain Description: DUF2 971 Location: 3984-42 96 bp Feature: gene Location: 4654-4782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, DUF2971 (pfam11185)

Seq: CACYKK010000198.1 uncultured Lachnospiraceae bacterium isolate RUG12021 genome assembly, contig: RUG12021_asm_198, whole genome shotgun sequence (8342 bp)
Overview 1 RT 1: 2012-6096 bp Neighborhood of RT #1 [2012, 6096] INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT-GII GIIM DUF5372 Feature: gene Location: 2012-2956 bp Feature: domain Description: INT_RitB_C_like Location: 2324-2879 bp Feature: domain Description: INT_RitB_C_like Location: 23 24-2879 bp Feature: gene Location: 2953-4128 bp Feature: domain Description: Phage_int_SAM_1 Location: 3313-3469 bp Feature: domain Description: Phage_int_SAM_1 Location: 3 3 13 -3 469 bp Feature: domain Description: INT_RitA_C_like Location: 3559-4096 bp Feature: domain Description: INT_RitA_C_like Location: 3 559-4096 bp Feature: gene Location: 4348-5409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4363-4957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 63 -4957 bp Feature: domain Description: GIIM Note: maturase Location: 5014-5239 bp Feature: domain Description: GIIM Note: maturase Location: 5014-523 9 bp Feature: gene Location: 5427-5666 bp Feature: domain Description: DUF5372 Location: 5445-5655 bp Feature: domain Description: DUF53 72 Location: 5445-5655 bp Feature: gene Location: 5689-6096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), RVT-GII, GIIM (pfam08388), DUF5372 (pfam17342)