myRT

myRT report for GCA_902775185.1_Rumen_uncultured_genome_RUG12045

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Seq: CACYLR010000019.1 uncultured Lachnospiraceae bacterium isolate RUG12045 genome assembly, contig: RUG12045_asm_19, whole genome shotgun sequence (19029 bp)
Overview 1 RT 1: 12071-18348 bp Neighborhood of RT #1 [12071, 18348] TIGR03986 TIGR03986 CtkA RVT-CRISPR cas1_HMARI Cas2_I_II_III Feature: gene Location: 12071-14215 bp Feature: domain Description: TIGR03986 Location: 12095-12455 bp Feature: domain Description: TIGR03986 Location: 1 2095-1 2455 bp Feature: domain Description: TIGR03986 Location: 12629-13556 bp Feature: domain Description: TIGR03986 Location: 1 2629-1 3556 bp Feature: gene Location: 14328-15425 bp Feature: domain Description: CtkA Location: 14478-15306 bp Feature: domain Description: CtkA Location: 1 4478-1 5306 bp Feature: gene Location: 15749-17653 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 15959-16538 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 5959-1 6538 bp Feature: domain Description: cas1_HMARI Location: 16679-17645 bp Feature: domain Description: cas1 _HMARI Location: 1 6679-1 7645 bp Feature: gene Location: 17666-17926 bp Feature: domain Description: Cas2_I_II_III Location: 17675-17903 bp Feature: domain Description: Cas2_I_II_III Location: 1 7675-1 7903 bp Feature: gene Location: 18112-18348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03986 (CRISPR-associated protein), CtkA (cd17792), RVT-CRISPR, cas1_HMARI (TIGR03641), Cas2_I_II_III (cl11442)

Seq: CACYLR010000046.1 uncultured Lachnospiraceae bacterium isolate RUG12045 genome assembly, contig: RUG12045_asm_46, whole genome shotgun sequence (14538 bp)
Overview 1 RT 1: 8413-14526 bp Neighborhood of RT #1 [8413, 14537] 3D_containing_proteins NlpD Spr RVT-GII HNHc TraC-F-type Feature: gene Location: 8413-10968 bp Feature: domain Description: 3D_containing_proteins Location: 9730-9997 bp Feature: domain Description: 3D_containing_proteins Location: 9730-9997 bp Feature: domain Description: NlpD Location: 10147-10549 bp Feature: domain Description: NlpD Location: 10147-10549 bp Feature: domain Description: Spr Location: 10603-10957 bp Feature: domain Description: Spr Location: 10603-10957 bp Feature: gene Location: 10970-11209 bp Feature: gene Location: 11298-13181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11634-12351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11634-12 351 bp Feature: domain Description: HNHc Note: nucleases Location: 12933-13071 bp Feature: domain Description: HNHc Note: nucleases Location: 12 933-13071 bp Feature: gene Location: 13380-13628 bp Feature: gene Location: 13914-14537 bp Feature: domain Description: TraC-F-type Location: 13935-14526 bp Feature: domain Description: TraC-F-type Location: 13935-1452 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 3D_containing_proteins (cd14667), NlpD (COG0739), Spr (COG0791), RVT-GII, HNHc (smart00507), TraC-F-type (TIGR02746)