myRT

myRT report for GCA_902777075.1_Rumen_uncultured_genome_RUG12239

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Seq: CACYSL010000026.1 uncultured Lachnospiraceae bacterium isolate RUG12239 genome assembly, contig: RUG12239_asm_26, whole genome shotgun sequence (31504 bp)
Overview 1 RT 1: 1-5592 bp Neighborhood of RT #1 [1, 5612] RVT-Retrons COG4637 COG4637 PIN_XPG_RAD2 Feature: gene Location: 1-162 bp Feature: gene Location: 294-428 bp Feature: gene Location: 514-1527 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 634-1201 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 634-1 201 bp Feature: gene Location: 1776-3728 bp Feature: domain Description: COG4637 Location: 1785-1932 bp Feature: domain Description: COG4637 Location: 1 785-1 932 bp Feature: domain Description: COG4637 Location: 2502-2802 bp Feature: domain Description: COG4637 Location: 2502-2802 bp Feature: gene Location: 4188-5612 bp Feature: domain Description: PIN_XPG_RAD2 Location: 4233-5592 bp Feature: domain Description: PIN_XPG_RAD2 Location: 4233-5592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4637 (Predicted ATPase ), PIN_XPG_RAD2 (cd09868), RVT-Retrons

Seq: CACYSL010000043.1 uncultured Lachnospiraceae bacterium isolate RUG12239 genome assembly, contig: RUG12239_asm_43, whole genome shotgun sequence (10959 bp)
Overview 1 RT 1: 93-7168 bp Neighborhood of RT #1 [93, 7200] RVT-GII TnpB_IS66 LZ_Tnp_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM DNA_methylase Endonuc-FokI_C Feature: gene Location: 93-236 bp Feature: gene Location: 223-780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-763 bp Feature: gene Location: 869-1267 bp Feature: gene Location: 1260-1619 bp Feature: domain Description: TnpB_IS66 Location: 1290-1587 bp Feature: domain Description: TnpB_IS66 Location: 12 90-1587 bp Feature: gene Location: 1723-3393 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1864-2104 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1864-2 104 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2311-3199 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 311-3199 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3220-3346 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 32 2 0-3346 bp Feature: gene Location: 3458-4204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3467-3746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3467-3746 bp Feature: domain Description: GIIM Note: maturase Location: 3806-4031 bp Feature: domain Description: GIIM Note: maturase Location: 3806-4031 bp Feature: gene Location: 4593-5666 bp Feature: domain Description: DNA_methylase Location: 4617-5598 bp Feature: domain Description: DNA_methylase Location: 4617-5598 bp Feature: gene Location: 5668-7200 bp Feature: domain Description: Endonuc-FokI_C Location: 6712-7168 bp Feature: domain Description: Endonuc-FokI_C Location: 6712 -7168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), GIIM (pfam08388), DNA_methylase (pfam00145), Endonuc-FokI_C (pfam09254)