myRT

myRT report for GCA_902777095.1_Rumen_uncultured_genome_RUG12232

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Seq: CACYST010000094.1 Ruminococcus flavefaciens isolate RUG12232 genome assembly, contig: RUG12232_asm_94, whole genome shotgun sequence (22683 bp)
Overview 1 RT 1: 1623-5674 bp Neighborhood of RT #1 [1623, 5674] PRK00331 RVT-Retrons PinE Feature: gene Location: 1623-1781 bp Feature: gene Location: 1786-2769 bp Feature: domain Description: PRK00331 Location: 1822-2497 bp Feature: domain Description: PRK00331 Location: 1 822-2497 bp Feature: gene Location: 2997-3950 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3150-3699 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 50-3699 bp Feature: gene Location: 4012-4581 bp Feature: domain Description: PinE Location: 4015-4441 bp Feature: domain Description: PinE Location: 401 5-4441 bp Feature: gene Location: 4733-5674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00331 (isomerizing glutamine--fructose-6-phosphate transaminase), RVT-Retrons, PinE (COG1961)

Seq: CACYST010000243.1 Ruminococcus flavefaciens isolate RUG12232 genome assembly, contig: RUG12232_asm_243, whole genome shotgun sequence (7988 bp)
Overview 1 RT 1: 2211-7835 bp Neighborhood of RT #1 [2211, 7835] DegV Hydrolase_4 Hydrolase_4 RVT-Retrons RpoE Feature: gene Location: 2211-3092 bp Feature: domain Description: DegV Location: 2223-3057 bp Feature: domain Description: DegV Location: 2 2 2 3-3057 bp Feature: gene Location: 3566-4630 bp Feature: domain Description: Hydrolase_4 Location: 3815-4127 bp Feature: domain Description: Hydrolase_4 Location: 3815-412 7 bp Feature: domain Description: Hydrolase_4 Location: 4259-4397 bp Feature: domain Description: Hydrolase_4 Location: 42 59-4397 bp Feature: gene Location: 4611-5588 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4758-5310 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4758-5310 bp Feature: gene Location: 6170-6730 bp Feature: domain Description: RpoE Location: 6209-6713 bp Feature: domain Description: RpoE Location: 62 09-6713 bp Feature: gene Location: 6717-7835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DegV (TIGR00762), Hydrolase_4 (pfam12146), RVT-Retrons, RpoE (COG3343)