myRT

myRT report for GCA_902777225.1_Rumen_uncultured_genome_RUG12250

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Seq: CACYTB010000007.1 uncultured Prevotellaceae bacterium isolate RUG12250 genome assembly, contig: RUG12250_asm_7, whole genome shotgun sequence (80314 bp)
Overview 1 RT 1: 54794-58787 bp Neighborhood of RT #1 [54794, 58960] Avd_like RVT-DGRs XerC Mod Feature: gene Location: 54794-55189 bp Feature: domain Description: Avd_like Location: 54830-55148 bp Feature: domain Description: Avd_like Location: 54830-551 48 bp Feature: gene Location: 55262-55429 bp Feature: gene Location: 55456-56775 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 55639-56332 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 55639-56332 bp Feature: gene Location: 56818-57999 bp Feature: domain Description: XerC Location: 57064-57979 bp Feature: domain Description: XerC Location: 57064-57979 bp Feature: gene Location: 58400-58960 bp Feature: domain Description: Mod Location: 58472-58787 bp Feature: domain Description: Mod Location: 58472-58787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XerC (COG4973), Mod (COG2189)

Seq: CACYTB010000048.1 uncultured Prevotellaceae bacterium isolate RUG12250 genome assembly, contig: RUG12250_asm_48, whole genome shotgun sequence (20535 bp)
Overview 1 RT 1: 404-3700 bp Neighborhood of RT #1 [404, 3900] Avd_like RVT-DGRs MutS_I PDDEXK_2 Feature: gene Location: 404-643 bp Feature: gene Location: 647-997 bp Feature: domain Description: Avd_like Location: 674-980 bp Feature: domain Description: Avd_like Location: 674-980 bp Feature: gene Location: 1017-2279 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1233-1923 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12 33-192 3 bp Feature: gene Location: 2239-2730 bp Feature: domain Description: MutS_I Location: 2296-2530 bp Feature: domain Description: MutS_I Location: 2 2 96-2 530 bp Feature: gene Location: 2998-3900 bp Feature: domain Description: PDDEXK_2 Location: 3019-3700 bp Feature: domain Description: PDDEXK_2 Location: 3019-3700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, MutS_I (pfam01624), PDDEXK_2 (pfam12784), Avd_like (cd16376)

Seq: CACYTB010000059.1 uncultured Prevotellaceae bacterium isolate RUG12250 genome assembly, contig: RUG12250_asm_59, whole genome shotgun sequence (17580 bp)
Overview 1 RT 1: 12160-17562 bp Neighborhood of RT #1 [12160, 17562] purH chaperone_ClpB RVT-GII GIIM Feature: gene Location: 12160-12753 bp Feature: domain Description: purH Location: 12175-12748 bp Feature: domain Description: purH Location: 12175-12748 bp Feature: gene Location: 13286-15802 bp Feature: domain Description: chaperone_ClpB Location: 13304-15773 bp Feature: domain Description: chaperone_ClpB Location: 13 3 04-15773 bp Feature: gene Location: 15936-17342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16278-16896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16278-16896 bp Feature: domain Description: GIIM Note: maturase Location: 16950-17160 bp Feature: domain Description: GIIM Note: maturase Location: 16950-17160 bp Feature: gene Location: 17371-17562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT purH (TIGR00355), chaperone_ClpB (TIGR03346), RVT-GII, GIIM (pfam08388)