myRT

myRT report for GCA_902777275.1_Rumen_uncultured_genome_RUG12253

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Seq: CACYTI010000001.1 uncultured Ruminococcus sp. isolate RUG12253 genome assembly, contig: RUG12253_asm_1, whole genome shotgun sequence (193286 bp)
Overview 1 RT 1: 2-1803 bp Neighborhood of RT #1 [2, 1838] RVT-GII GIIM LysR Feature: gene Location: 2-439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 -1 07 bp Feature: domain Description: GIIM Note: maturase Location: 158-392 bp Feature: domain Description: GIIM Note: maturase Location: 1 58-392 bp Feature: gene Location: 491-649 bp Feature: gene Location: 927-1838 bp Feature: domain Description: LysR Location: 930-1803 bp Feature: domain Description: LysR Location: 930-1 803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LysR (COG0583)

Seq: CACYTI010000013.1 uncultured Ruminococcus sp. isolate RUG12253 genome assembly, contig: RUG12253_asm_13, whole genome shotgun sequence (61946 bp)
Overview 1 RT 1: 50931-55694 bp Neighborhood of RT #1 [50931, 55694] YhdJ UPF0020 UPF0020 INT_RitC_C_like RVT-Retrons Feature: gene Location: 50931-53126 bp Feature: domain Description: YhdJ Location: 51303-51378 bp Feature: domain Description: YhdJ Location: 51303-51378 bp Feature: domain Description: UPF0020 Location: 51864-51948 bp Feature: domain Description: UPF002 0 Location: 51864-51948 bp Feature: domain Description: UPF0020 Location: 52518-52629 bp Feature: domain Description: UPF002 0 Location: 52 518-52 62 9 bp Feature: gene Location: 53856-54080 bp Feature: domain Description: INT_RitC_C_like Location: 53874-54045 bp Feature: domain Description: INT_RitC_C_like Location: 53874-54045 bp Feature: gene Location: 54143-55132 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54290-54908 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 542 90-54908 bp Feature: gene Location: 55149-55370 bp Feature: gene Location: 55536-55694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhdJ (COG0863), UPF0020 (pfam01170), INT_RitC_C_like (cd01182), RVT-Retrons