myRT

myRT report for GCA_902777445.1_Rumen_uncultured_genome_RUG12262

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Seq: CACYTR010000004.1 uncultured Prevotellaceae bacterium isolate RUG12262 genome assembly, contig: RUG12262_asm_4, whole genome shotgun sequence (67584 bp)
Overview 1 RT 1: 2-2799 bp Neighborhood of RT #1 [2, 3521] RVT-GII GIIM PTC1 WG_beta_rep WG_beta_rep Feature: gene Location: 2-706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-251 bp Feature: domain Description: GIIM Note: maturase Location: 311-521 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 -521 bp Feature: gene Location: 885-1754 bp Feature: domain Description: PTC1 Location: 891-1698 bp Feature: domain Description: PTC1 Location: 891 -1 698 bp Feature: gene Location: 1764-3521 bp Feature: domain Description: WG_beta_rep Location: 2139-2217 bp Feature: domain Description: WG_beta_rep Location: 21 39-221 7 bp Feature: domain Description: WG_beta_rep Location: 2715-2799 bp Feature: domain Description: WG_beta_rep Location: 271 5-2799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PTC1 (COG0631), WG_beta_rep (pfam14903)

Seq: CACYTR010000044.1 uncultured Prevotellaceae bacterium isolate RUG12262 genome assembly, contig: RUG12262_asm_44, whole genome shotgun sequence (17356 bp)
Overview 1 RT 1: 8818-17299 bp Neighborhood of RT #1 [8818, 17355] LacZ LacZ RVT-UG26 HflX HflX DUF4954 Feature: gene Location: 8818-11781 bp Feature: domain Description: LacZ Location: 9145-9337 bp Feature: domain Description: LacZ Location: 9145-9337 bp Feature: domain Description: LacZ Location: 9724-10261 bp Feature: domain Description: LacZ Location: 972 4-102 61 bp Feature: gene Location: 11888-12403 bp Feature: gene Location: 12569-13807 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 12770-13388 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 12 770-13388 bp Feature: gene Location: 14129-15448 bp Feature: domain Description: HflX Location: 14165-14369 bp Feature: domain Description: HflX Location: 14165-14369 bp Feature: domain Description: HflX Location: 14438-15398 bp Feature: domain Description: HflX Location: 14438-15398 bp Feature: gene Location: 15472-17355 bp Feature: domain Description: DUF4954 Location: 15484-17299 bp Feature: domain Description: DUF4954 Location: 15484-172 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacZ (COG3250), RVT-UG26, HflX (COG2262), DUF4954 (pfam16314)

Seq: CACYTR010000124.1 uncultured Prevotellaceae bacterium isolate RUG12262 genome assembly, contig: RUG12262_asm_124, whole genome shotgun sequence (9631 bp)
Overview 1 RT 1: 3-2043 bp Neighborhood of RT #1 [3, 2051] RVT-GII LPLAT_DHAPAT-like NigD_N NigD_C Feature: gene Location: 3-152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-99 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-99 bp Feature: gene Location: 220-1350 bp Feature: domain Description: LPLAT_DHAPAT-like Location: 496-901 bp Feature: domain Description: LPLAT_DHAPAT-like Location: 496-901 bp Feature: gene Location: 1392-2051 bp Feature: domain Description: NigD_N Location: 1512-1662 bp Feature: domain Description: NigD_N Location: 1512-1662 bp Feature: domain Description: NigD_C Location: 1725-2043 bp Feature: domain Description: NigD_C Location: 1725-2043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, LPLAT_DHAPAT-like (cd07993), NigD_N (pfam12667), NigD_C (pfam17415)