myRT

myRT report for GCA_902778005.1_Rumen_uncultured_genome_RUG12325

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Seq: CACYVY010000003.1 uncultured Prevotellaceae bacterium isolate RUG12325 genome assembly, contig: RUG12325_asm_3, whole genome shotgun sequence (141046 bp)
Overview 1 RT 1: 58130-62415 bp Neighborhood of RT #1 [58130, 62415] SpoVK RVT-Retrons Feature: gene Location: 58130-58885 bp Feature: gene Location: 58898-60667 bp Feature: domain Description: SpoVK Location: 59960-60617 bp Feature: domain Description: SpoVK Location: 59960-6061 7 bp Feature: gene Location: 60783-61796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60975-61563 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60975-61 563 bp Feature: gene Location: 61850-62080 bp Feature: gene Location: 62110-62415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoVK (COG0464), RVT-Retrons

Seq: CACYVY010000024.1 uncultured Prevotellaceae bacterium isolate RUG12325 genome assembly, contig: RUG12325_asm_24, whole genome shotgun sequence (66728 bp)
Overview 1 RT 1: 42865-49929 bp Neighborhood of RT #1 [42865, 49937] Glyco_hydro_115 GH115_C RVT-UG26 dCache_1 HAMP RsbU RsbW STAS_anti-anti-sigma_factors Feature: gene Location: 42865-45141 bp Feature: domain Description: Glyco_hydro_115 Location: 43291-44335 bp Feature: domain Description: Glyco_hydro_115 Location: 432 91-44335 bp Feature: domain Description: GH115_C Location: 44707-45127 bp Feature: domain Description: GH115_C Location: 44707-4512 7 bp Feature: gene Location: 45315-45830 bp Feature: gene Location: 46025-47197 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 46193-46811 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 46193-46811 bp Feature: gene Location: 47300-49615 bp Feature: domain Description: dCache_1 Location: 47717-48164 bp Feature: domain Description: dCache_1 Location: 47717-48164 bp Feature: domain Description: HAMP Location: 48275-48425 bp Feature: domain Description: HAMP Location: 482 75-4842 5 bp Feature: domain Description: RsbU Location: 48437-49205 bp Feature: domain Description: RsbU Location: 48437-492 05 bp Feature: domain Description: RsbW Location: 49232-49607 bp Feature: domain Description: RsbW Location: 492 32 -49607 bp Feature: gene Location: 49629-49937 bp Feature: domain Description: STAS_anti-anti-sigma_factors Location: 49641-49929 bp Feature: domain Description: STAS_anti-anti-sigma_factors Location: 49641-4992 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_115 (pfam15979), GH115_C (pfam17829), RVT-UG26, dCache_1 (pfam02743), HAMP (smart00304), RsbU (COG2208), RsbW (COG2172), STAS_anti-anti-sigma_factors (cd07043)