myRT

myRT report for GCA_902778185.1_Rumen_uncultured_genome_RUG12343

Download annotations/find similar RTs

Seq: CACYWY010000055.1 uncultured Clostridiales bacterium isolate RUG12343 genome assembly, contig: RUG12343_asm_55, whole genome shotgun sequence (13454 bp)
Overview 1 RT 1: 376-3682 bp Neighborhood of RT #1 [376, 3682] DUF2958 RVT-UG27 Feature: gene Location: 376-702 bp Feature: gene Location: 708-1565 bp Feature: domain Description: DUF2958 Location: 1257-1542 bp Feature: domain Description: DUF2958 Location: 1 257-1 542 bp Feature: gene Location: 1578-2816 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1773-2397 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1 773-2397 bp Feature: gene Location: 3160-3444 bp Feature: gene Location: 3536-3682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2958 (pfam11171), RVT-UG27

Seq: CACYWY010000066.1 uncultured Clostridiales bacterium isolate RUG12343 genome assembly, contig: RUG12343_asm_66, whole genome shotgun sequence (14204 bp)
Overview 1 RT 1: 3127-6922 bp Neighborhood of RT #1 [3127, 6922] RVT-DGRs Avd_like Feature: gene Location: 3127-3357 bp Feature: gene Location: 3469-3648 bp Feature: gene Location: 3668-4717 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3866-4472 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3866-4472 bp Feature: gene Location: 5034-5471 bp Feature: domain Description: Avd_like Location: 5082-5418 bp Feature: domain Description: Avd_like Location: 5082 -5418 bp Feature: gene Location: 5549-6922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: CACYWY010000081.1 uncultured Clostridiales bacterium isolate RUG12343 genome assembly, contig: RUG12343_asm_81, whole genome shotgun sequence (11442 bp)
Overview 1 RT 1: 47-2932 bp Neighborhood of RT #1 [47, 2932] DUF2958 RVT-UG27 Feature: gene Location: 47-859 bp Feature: domain Description: DUF2958 Location: 551-839 bp Feature: domain Description: DUF2958 Location: 551-83 9 bp Feature: gene Location: 872-2110 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1067-1691 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1067-1691 bp Feature: gene Location: 2203-2427 bp Feature: gene Location: 2465-2932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2958 (pfam11171), RVT-UG27

Seq: CACYWY010000222.1 uncultured Clostridiales bacterium isolate RUG12343 genome assembly, contig: RUG12343_asm_222, whole genome shotgun sequence (5605 bp)
Overview 1 RT 1: 2915-5605 bp Neighborhood of RT #1 [2915, 5604] major_cap_HK97 RVT-GII Feature: gene Location: 2915-4063 bp Feature: domain Description: major_cap_HK97 Location: 2936-4049 bp Feature: domain Description: major_cap_HK97 Location: 2936-4 04 9 bp Feature: gene Location: 4315-4506 bp Feature: gene Location: 4597-5604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4888-5605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 888-5605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT major_cap_HK97 (TIGR01554), RVT-GII

Seq: CACYWY010000305.1 uncultured Clostridiales bacterium isolate RUG12343 genome assembly, contig: RUG12343_asm_305, whole genome shotgun sequence (4131 bp)
Overview 1 RT 1: 1443-3875 bp Neighborhood of RT #1 [1443, 4096] PG_binding_1 PG_binding_1 Peptidase_C39_2 GH25_PlyB-like RVT-DGRs Feature: gene Location: 1443-3077 bp Feature: domain Description: PG_binding_1 Location: 1593-1668 bp Feature: domain Description: PG_binding_1 Location: 15 93-1668 bp Feature: domain Description: PG_binding_1 Location: 1755-1863 bp Feature: domain Description: PG_binding_1 Location: 175 5 -1863 bp Feature: domain Description: Peptidase_C39_2 Location: 2010-2352 bp Feature: domain Description: Peptidase_C39_2 Location: 2010-235 2 bp Feature: domain Description: GH25_PlyB-like Location: 2490-3024 bp Feature: domain Description: GH25 _PlyB-like Location: 2490-3024 bp Feature: gene Location: 3067-3255 bp Feature: gene Location: 3266-4096 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3272-3875 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3272-3875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PG_binding_1 (pfam01471), Peptidase_C39_2 (pfam13529), GH25_PlyB-like (cd06523), RVT-DGRs