myRT

myRT report for GCA_902779035.1_Rumen_uncultured_genome_RUG12438

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Seq: CACZAH010000003.1 uncultured Erysipelotrichaceae bacterium isolate RUG12438 genome assembly, contig: RUG12438_asm_3, whole genome shotgun sequence (67121 bp)
Overview 1 RT 1: 57464-66665 bp Neighborhood of RT #1 [57464, 66886] rpoB rpoB PRK00566 RVT-DGRs Avd_like MutS_I Feature: gene Location: 57464-61042 bp Feature: domain Description: rpoB Location: 57482-58109 bp Feature: domain Description: rpoB Location: 57482-581 09 bp Feature: domain Description: rpoB Location: 58109-60749 bp Feature: domain Description: rpoB Location: 581 09-60749 bp Feature: gene Location: 61042-64677 bp Feature: domain Description: PRK00566 Location: 61054-64630 bp Feature: domain Description: PRK00566 Location: 61 054-64630 bp Feature: gene Location: 64973-66163 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 65180-65906 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 651 80-65906 bp Feature: gene Location: 66138-66308 bp Feature: domain Description: Avd_like Location: 66144-66285 bp Feature: domain Description: Avd_like Location: 661 44-66285 bp Feature: gene Location: 66467-66886 bp Feature: domain Description: MutS_I Location: 66470-66665 bp Feature: domain Description: MutS_I Location: 66470-66665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-DGRs, Avd_like (cd16376), MutS_I (pfam01624)

Seq: CACZAH010000007.1 uncultured Erysipelotrichaceae bacterium isolate RUG12438 genome assembly, contig: RUG12438_asm_7, whole genome shotgun sequence (66741 bp)
Overview 1 RT 1: 3986-6847 bp Neighborhood of RT #1 [3986, 6847] spore_II_AA SigBFG RVT-Retrons Feature: gene Location: 3986-4324 bp Feature: domain Description: spore_II_AA Location: 4004-4307 bp Feature: domain Description: spore_II_AA Location: 4004-4307 bp Feature: gene Location: 4300-4998 bp Feature: domain Description: SigBFG Location: 4360-4990 bp Feature: domain Description: SigBFG Location: 4360-4990 bp Feature: gene Location: 5033-5974 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5165-5720 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5165-572 0 bp Feature: gene Location: 6408-6692 bp Feature: gene Location: 6701-6847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spore_II_AA (TIGR02886), SigBFG (TIGR02980), RVT-Retrons

Seq: CACZAH010000018.1 uncultured Erysipelotrichaceae bacterium isolate RUG12438 genome assembly, contig: RUG12438_asm_18, whole genome shotgun sequence (37342 bp)
Overview 1 RT 1: 22264-26548 bp Neighborhood of RT #1 [22264, 26778] PDDEXK_2 gmk RVT-DGRs Avd_like MutS_I Feature: gene Location: 22264-23205 bp Feature: domain Description: PDDEXK_2 Location: 22348-23038 bp Feature: domain Description: PDDEXK_2 Location: 223 48-23 03 8 bp Feature: gene Location: 23412-24086 bp Feature: domain Description: gmk Location: 23439-24015 bp Feature: domain Description: gmk Location: 23 43 9-24015 bp Feature: gene Location: 24832-26061 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25039-25762 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2503 9-25762 bp Feature: gene Location: 26045-26380 bp Feature: domain Description: Avd_like Location: 26075-26366 bp Feature: domain Description: Avd_like Location: 26075-263 66 bp Feature: gene Location: 26365-26778 bp Feature: domain Description: MutS_I Location: 26368-26548 bp Feature: domain Description: MutS_I Location: 263 68-26548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), gmk (PRK14738), RVT-DGRs, Avd_like (cd16376), MutS_I (pfam01624)

Seq: CACZAH010000037.1 uncultured Erysipelotrichaceae bacterium isolate RUG12438 genome assembly, contig: RUG12438_asm_37, whole genome shotgun sequence (12312 bp)
Overview 1 RT 1: 1479-5364 bp Neighborhood of RT #1 [1479, 6131] Gly-zipper_YMGG RVT-DGRs MutS_I PulG Feature: gene Location: 1479-1727 bp Feature: gene Location: 1870-2634 bp Feature: domain Description: Gly-zipper_YMGG Location: 2530-2593 bp Feature: domain Description: Gly-zipper_YMGG Location: 2530-2593 bp Feature: gene Location: 2984-4189 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3191-3914 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3191-3914 bp Feature: gene Location: 4490-4909 bp Feature: domain Description: MutS_I Location: 4493-4679 bp Feature: domain Description: MutS_I Location: 4 4 93-4 679 bp Feature: gene Location: 5130-6131 bp Feature: domain Description: PulG Location: 5139-5364 bp Feature: domain Description: PulG Location: 5139-5364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gly-zipper_YMGG (pfam13441), RVT-DGRs, MutS_I (pfam01624), PulG (pfam11773)