myRT

myRT report for GCA_902779175.1_Rumen_uncultured_genome_RUG12443

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Seq: CACZAQ010000001.1 uncultured Ruminococcus sp. isolate RUG12443 genome assembly, contig: RUG12443_asm_1, whole genome shotgun sequence (131710 bp)
Overview 1 RT 1: 75971-83801 bp Neighborhood of RT #1 [75971, 83842] Beta_propel RpoE RVT-GII GIIM Ppa P-type_ATPase_Ca_prok P-type_ATPase_SERCA Feature: gene Location: 75971-77974 bp Feature: domain Description: Beta_propel Location: 76430-77891 bp Feature: domain Description: Beta_propel Location: 76430-77891 bp Feature: gene Location: 77980-78468 bp Feature: domain Description: RpoE Location: 77995-78466 bp Feature: domain Description: RpoE Location: 77995-78466 bp Feature: gene Location: 79000-80409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79351-79972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79351 -79972 bp Feature: domain Description: GIIM Note: maturase Location: 80020-80233 bp Feature: domain Description: GIIM Note: maturase Location: 80020-80233 bp Feature: gene Location: 80592-81128 bp Feature: domain Description: Ppa Location: 80604-81105 bp Feature: domain Description: Ppa Location: 80604-81 1 05 bp Feature: gene Location: 81233-83842 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 81299-83429 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 81 299-83429 bp Feature: domain Description: P-type_ATPase_SERCA Location: 83543-83801 bp Feature: domain Description: P-type_ATPase_SERCA Location: 83543-83801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Beta_propel (pfam09826), RpoE (COG3343), RVT-GII, GIIM (pfam08388), Ppa (COG0221), P-type_ATPase_Ca_prok (cd02089), P-type_ATPase_SERCA (cd02083)

Seq: CACZAQ010000023.1 uncultured Ruminococcus sp. isolate RUG12443 genome assembly, contig: RUG12443_asm_23, whole genome shotgun sequence (25824 bp)
Overview 1 RT 1: 16089-19570 bp Neighborhood of RT #1 [16089, 20409] RVT-Retrons URH1 HdeD Feature: gene Location: 16089-16331 bp Feature: gene Location: 16425-16727 bp Feature: gene Location: 16750-17799 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16978-17530 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16978-17530 bp Feature: gene Location: 17863-18960 bp Feature: domain Description: URH1 Location: 18025-18949 bp Feature: domain Description: URH1 Location: 1802 5-18949 bp Feature: gene Location: 19003-20409 bp Feature: domain Description: HdeD Location: 19048-19570 bp Feature: domain Description: HdeD Location: 19048-19570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, URH1 (COG1957), HdeD (COG3247)

Seq: CACZAQ010000030.1 uncultured Ruminococcus sp. isolate RUG12443 genome assembly, contig: RUG12443_asm_30, whole genome shotgun sequence (37947 bp)
Overview 1 RT 1: 8-3471 bp Neighborhood of RT #1 [8, 3479] RVT-GII GIIM SmpB recR Feature: gene Location: 8-1486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-103 7 bp Feature: domain Description: GIIM Note: maturase Location: 1088-1313 bp Feature: domain Description: GIIM Note: maturase Location: 1088-13 13 bp Feature: gene Location: 2419-2877 bp Feature: domain Description: SmpB Location: 2431-2872 bp Feature: domain Description: SmpB Location: 243 1-2872 bp Feature: gene Location: 2877-3479 bp Feature: domain Description: recR Location: 2898-3471 bp Feature: domain Description: recR Location: 2898-3 471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), recR (TIGR00615), RVT-GII, GIIM (pfam08388)