myRT

myRT report for GCA_902779185.1_Rumen_uncultured_genome_RUG12442

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Seq: CACZAM010000001.1 uncultured Clostridiales bacterium isolate RUG12442 genome assembly, contig: RUG12442_asm_1, whole genome shotgun sequence (164926 bp)
Overview 1 RT 1: 25748-34913 bp 2 RT 2: 37788-44939 bp Neighborhood of RT #1 [25748, 34921] guaA UshA RVT-UG26 NHLM_micro_ABC1 NHLM_micro_ABC2 Neighborhood of RT #2 [37788, 44965] MATE_like_4 RVT-UG26 zinc_ribbon_2 SH3_3 SH3_3 Feature: gene Location: 25748-27292 bp Feature: domain Description: guaA Location: 25760-27290 bp Feature: domain Description: guaA Location: 25760-27290 bp Feature: gene Location: 27304-29112 bp Feature: domain Description: UshA Location: 27364-28699 bp Feature: domain Description: UshA Location: 27364-28699 bp Feature: gene Location: 29141-30385 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 29351-29963 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 29351 -29963 bp Feature: gene Location: 30566-32758 bp Feature: domain Description: NHLM_micro_ABC1 Location: 30587-32741 bp Feature: domain Description: NHLM_micro_ABC1 Location: 30587-32741 bp Feature: gene Location: 32762-34921 bp Feature: domain Description: NHLM_micro_ABC2 Location: 32960-34913 bp Feature: domain Description: NHLM_micro_ABC2 Location: 32960-3491 3 bp Feature: gene Location: 37788-39176 bp Feature: domain Description: MATE_like_4 Location: 37851-39129 bp Feature: domain Description: MATE_like_4 Location: 37851 -391 29 bp Feature: gene Location: 39176-41044 bp Feature: gene Location: 41274-42500 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 41484-42099 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 41 484-42099 bp Feature: gene Location: 42667-44151 bp Feature: gene Location: 44168-44965 bp Feature: domain Description: zinc_ribbon_2 Location: 44177-44234 bp Feature: domain Description: zinc_ribbon_2 Location: 441 77-44234 bp Feature: domain Description: SH3_3 Location: 44516-44666 bp Feature: domain Description: SH3_3 Location: 4451 6-44666 bp Feature: domain Description: SH3_3 Location: 44789-44939 bp Feature: domain Description: SH3_3 Location: 44789-44939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT guaA (PRK00074), UshA (COG0737), RVT-UG26, NHLM_micro_ABC1 (TIGR03796), NHLM_micro_ABC2 (TIGR03797), MATE_like_4 (cd13144), zinc_ribbon_2 (pfam13240), SH3_3 (pfam08239)

Seq: CACZAM010000069.1 uncultured Clostridiales bacterium isolate RUG12442 genome assembly, contig: RUG12442_asm_69, whole genome shotgun sequence (6130 bp)
Overview 1 RT 1: 706-3545 bp Neighborhood of RT #1 [706, 3676] RVT-GII GIIM PRK00566 Feature: gene Location: 706-1962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 910-1525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 910-152 5 bp Feature: domain Description: GIIM Note: maturase Location: 1579-1813 bp Feature: domain Description: GIIM Note: maturase Location: 1579-1813 bp Feature: gene Location: 2088-2252 bp Feature: gene Location: 2528-3676 bp Feature: domain Description: PRK00566 Location: 2534-3545 bp Feature: domain Description: PRK00566 Location: 2 534-3545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional)