myRT

myRT report for GCA_902779255.1_Rumen_uncultured_genome_RUG12448

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Seq: CACZAV010000008.1 uncultured Prevotellaceae bacterium isolate RUG12448 genome assembly, contig: RUG12448_asm_8, whole genome shotgun sequence (80179 bp)
Overview 1 RT 1: 26091-30825 bp Neighborhood of RT #1 [26091, 30833] RVT-AbiP2 SlpA AroC Feature: gene Location: 26091-26450 bp Feature: gene Location: 27041-27175 bp Feature: gene Location: 27363-29018 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 27798-28254 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 27798-28254 bp Feature: gene Location: 29159-29740 bp Feature: domain Description: SlpA Location: 29162-29651 bp Feature: domain Description: SlpA Location: 291 62-29651 bp Feature: gene Location: 29757-30833 bp Feature: domain Description: AroC Location: 29763-30825 bp Feature: domain Description: AroC Location: 29763-30825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, SlpA (COG1047), AroC (COG0082)

Seq: CACZAV010000011.1 uncultured Prevotellaceae bacterium isolate RUG12448 genome assembly, contig: RUG12448_asm_11, whole genome shotgun sequence (64175 bp)
Overview 1 RT 1: 33273-37757 bp Neighborhood of RT #1 [33273, 37783] LolD RVT-UG26 DUF4359 KOG4364 DUF4424 DUF4424 YARHG Feature: gene Location: 33273-33947 bp Feature: domain Description: LolD Location: 33276-33930 bp Feature: domain Description: LolD Location: 332 76-33930 bp Feature: gene Location: 34121-34636 bp Feature: gene Location: 34787-36022 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 34988-35606 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 34988-35606 bp Feature: gene Location: 36092-36679 bp Feature: domain Description: DUF4359 Location: 36137-36413 bp Feature: domain Description: DUF4359 Location: 36137-36413 bp Feature: domain Description: KOG4364 Location: 36413-36671 bp Feature: domain Description: KOG4364 Location: 36413-36671 bp Feature: gene Location: 36713-37783 bp Feature: domain Description: DUF4424 Location: 36779-37058 bp Feature: domain Description: DUF442 4 Location: 36779-37058 bp Feature: domain Description: DUF4424 Location: 37127-37319 bp Feature: domain Description: DUF442 4 Location: 3712 7-37319 bp Feature: domain Description: YARHG Location: 37622-37757 bp Feature: domain Description: YARHG Location: 3762 2 -37757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LolD (COG1136), RVT-UG26, DUF4359 (pfam14271), KOG4364 (KOG4364, Chromatin assembly factor-I ), DUF4424 (pfam14415), YARHG (pfam13308)

Seq: CACZAV010000043.1 uncultured Prevotellaceae bacterium isolate RUG12448 genome assembly, contig: RUG12448_asm_43, whole genome shotgun sequence (53540 bp)
Overview 1 RT 1: 9745-12345 bp Neighborhood of RT #1 [9745, 12345] INT_RitC_C_like GIIM RVT-GII Feature: gene Location: 9745-10794 bp Feature: domain Description: INT_RitC_C_like Location: 10150-10717 bp Feature: domain Description: INT_RitC_C_like Location: 10150-10717 bp Feature: gene Location: 11034-11273 bp Feature: domain Description: GIIM Note: maturase Location: 11061-11199 bp Feature: domain Description: GIIM Note: maturase Location: 11061-11199 bp Feature: gene Location: 11291-11890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11621-11831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11621-1183 1 bp Feature: gene Location: 11902-12045 bp Feature: gene Location: 12127-12345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitC_C_like (cd01182), GIIM (pfam08388), RVT-GII