myRT

myRT report for GCA_902780395.1_Rumen_uncultured_genome_RUG12568

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Seq: CACZFH010000002.1 uncultured Erysipelotrichaceae bacterium isolate RUG12568 genome assembly, contig: RUG12568_asm_2, whole genome shotgun sequence (90547 bp)
Overview 1 RT 1: 62008-67804 bp Neighborhood of RT #1 [62008, 67851] RVT-DGRs XhlA Phage_holin_5_2 Feature: gene Location: 62008-63300 bp Feature: gene Location: 63300-65249 bp Feature: gene Location: 65661-66905 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66000-66633 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66000-66633 bp Feature: gene Location: 67265-67579 bp Feature: domain Description: XhlA Location: 67379-67499 bp Feature: domain Description: XhlA Location: 67379-67499 bp Feature: gene Location: 67600-67851 bp Feature: domain Description: Phage_holin_5_2 Location: 67639-67804 bp Feature: domain Description: Phage_holin_5_2 Location: 67639-67804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, XhlA (pfam10779), Phage_holin_5_2 (pfam16079)

Seq: CACZFH010000019.1 uncultured Erysipelotrichaceae bacterium isolate RUG12568 genome assembly, contig: RUG12568_asm_19, whole genome shotgun sequence (53114 bp)
Overview 1 RT 1: 38104-44877 bp Neighborhood of RT #1 [38104, 45323] PRK15483 RVT-Retrons HTH_36 SR_TndX_transposase Recombinase Zn_ribbon_recom Feature: gene Location: 38104-41031 bp Feature: domain Description: PRK15483 Location: 38107-41029 bp Feature: domain Description: PRK15483 Location: 38107-4102 9 bp Feature: gene Location: 41334-41558 bp Feature: gene Location: 41631-42866 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41844-42438 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41844-42 438 bp Feature: gene Location: 43025-43519 bp Feature: domain Description: HTH_36 Location: 43079-43238 bp Feature: domain Description: HTH_36 Location: 43079-432 38 bp Feature: gene Location: 43671-45323 bp Feature: domain Description: SR_TndX_transposase Location: 43782-44208 bp Feature: domain Description: SR_TndX_transposase Location: 43782 -442 08 bp Feature: domain Description: Recombinase Location: 44310-44661 bp Feature: domain Description: Recombinase Location: 44310-44661 bp Feature: domain Description: Zn_ribbon_recom Location: 44697-44877 bp Feature: domain Description: Zn_ribbon_recom Location: 44697-44877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15483 (type III restriction-modification system endonuclease), RVT-Retrons, HTH_36 (pfam13730), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: CACZFH010000044.1 uncultured Erysipelotrichaceae bacterium isolate RUG12568 genome assembly, contig: RUG12568_asm_44, whole genome shotgun sequence (11770 bp)
Overview 1 RT 1: 1741-6864 bp Neighborhood of RT #1 [1741, 7691] DUF1016_N YhcG_C YitT RVT-AbiA AAA_15 Feature: gene Location: 1741-2610 bp Feature: domain Description: DUF1016_N Location: 1825-2155 bp Feature: domain Description: DUF1016_N Location: 1825-2155 bp Feature: domain Description: YhcG_C Location: 2257-2575 bp Feature: domain Description: YhcG_C Location: 2257-2575 bp Feature: gene Location: 3011-3355 bp Feature: domain Description: YitT Location: 3020-3347 bp Feature: domain Description: YitT Location: 3 020-3 3 47 bp Feature: gene Location: 3585-5417 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 3951-4425 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 3 951-4425 bp Feature: gene Location: 5592-5822 bp Feature: gene Location: 5865-7691 bp Feature: domain Description: AAA_15 Location: 5934-6864 bp Feature: domain Description: AAA_15 Location: 593 4-6864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1016_N (pfam17761), YhcG_C, YitT (COG1284), RVT-AbiA, AAA_15 (pfam13175)