myRT

myRT report for GCA_902780905.1_Rumen_uncultured_genome_RUG12617

Download annotations/find similar RTs

Seq: CACZHH010000006.1 uncultured Prevotellaceae bacterium isolate RUG12617 genome assembly, contig: RUG12617_asm_6, whole genome shotgun sequence (145016 bp)
Overview 1 RT 1: 46212-53200 bp Neighborhood of RT #1 [46212, 53200] NigD_N NigD_C LPLAT_DHAPAT-like RVT-GII COG1373 Feature: gene Location: 46212-46871 bp Feature: domain Description: NigD_N Location: 46332-46482 bp Feature: domain Description: NigD_N Location: 46332-46482 bp Feature: domain Description: NigD_C Location: 46545-46863 bp Feature: domain Description: NigD_C Location: 46545-46863 bp Feature: gene Location: 46913-48043 bp Feature: domain Description: LPLAT_DHAPAT-like Location: 47192-47594 bp Feature: domain Description: LPLAT_DHAPAT-like Location: 471 92-47594 bp Feature: gene Location: 48111-48386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48114-48333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 1 4-48333 bp Feature: gene Location: 48641-49780 bp Feature: domain Description: COG1373 Location: 48650-49751 bp Feature: domain Description: COG1 373 Location: 48650-49751 bp Feature: gene Location: 50723-53200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NigD_N (pfam12667), NigD_C (pfam17415), LPLAT_DHAPAT-like (cd07993), RVT-GII, COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: CACZHH010000028.1 uncultured Prevotellaceae bacterium isolate RUG12617 genome assembly, contig: RUG12617_asm_28, whole genome shotgun sequence (43090 bp)
Overview 1 RT 1: 32312-40352 bp Neighborhood of RT #1 [32312, 40402] LacZ LacZ RVT-UG26 HflX HflX Feature: gene Location: 32312-35275 bp Feature: domain Description: LacZ Location: 32639-32831 bp Feature: domain Description: LacZ Location: 32 639-32 831 bp Feature: domain Description: LacZ Location: 33218-33722 bp Feature: domain Description: LacZ Location: 332 18-3372 2 bp Feature: gene Location: 35382-35897 bp Feature: gene Location: 36063-37301 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 36264-36882 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 362 64-36882 bp Feature: gene Location: 37740-38807 bp Feature: gene Location: 39083-40402 bp Feature: domain Description: HflX Location: 39119-39323 bp Feature: domain Description: HflX Location: 39119-3932 3 bp Feature: domain Description: HflX Location: 39392-40352 bp Feature: domain Description: HflX Location: 39392 -40352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacZ (COG3250), RVT-UG26, HflX (COG2262)

Seq: CACZHH010000041.1 uncultured Prevotellaceae bacterium isolate RUG12617 genome assembly, contig: RUG12617_asm_41, whole genome shotgun sequence (27543 bp)
Overview 1 RT 1: 25206-27448 bp Neighborhood of RT #1 [25206, 27450] WYL RVT-Retrons Feature: gene Location: 25206-26282 bp Feature: domain Description: WYL Location: 25692-26253 bp Feature: domain Description: WYL Location: 25692-26253 bp Feature: gene Location: 26361-26522 bp Feature: gene Location: 26869-27450 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27070-27448 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27070-27448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WYL (pfam13280), RVT-Retrons