myRT

myRT report for GCA_902781135.1_Rumen_uncultured_genome_RUG12633

Download annotations/find similar RTs

Seq: CACZIH010000001.1 uncultured Bacteroidetes bacterium isolate RUG12633 genome assembly, contig: RUG12633_asm_1, whole genome shotgun sequence (202716 bp)
Overview 1 RT 1: 79259-83568 bp 2 RT 2: 144459-153093 bp 3 RT 3: 166430-175570 bp Neighborhood of RT #1 [79259, 83568] DnaB RVT-Retrons DnaB_C Neighborhood of RT #2 [144459, 155924] RVT-UG28b COG3183 YprA YprA Neighborhood of RT #3 [166430, 175578] AAA RpoD RVT-Retrons RecB RecB Feature: gene Location: 79259-80869 bp Feature: domain Description: DnaB Location: 79340-80648 bp Feature: domain Description: DnaB Location: 79340-80648 bp Feature: gene Location: 80973-81155 bp Feature: gene Location: 81167-82351 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81464-82049 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81 464-82049 bp Feature: gene Location: 82348-83286 bp Feature: domain Description: DnaB_C Location: 82402-83206 bp Feature: domain Description: DnaB_C Location: 82402-83206 bp Feature: gene Location: 83356-83568 bp Feature: gene Location: 144459-145727 bp Feature: gene Location: 145773-146702 bp Feature: gene Location: 146986-148644 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 147496-148210 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 1 47496-1 4821 0 bp Feature: gene Location: 148780-149514 bp Feature: domain Description: COG3183 Location: 149119-149473 bp Feature: domain Description: COG31 83 Location: 1 491 1 9-1 49473 bp Feature: gene Location: 149511-155924 bp Feature: domain Description: YprA Location: 149826-150459 bp Feature: domain Description: YprA Location: 1 49826-1 50459 bp Feature: domain Description: YprA Location: 152748-153093 bp Feature: domain Description: YprA Location: 1 52748-1 53093 bp Feature: gene Location: 166430-168124 bp Feature: domain Description: AAA Location: 167474-167861 bp Feature: domain Description: AAA Location: 1 67474-1 67861 bp Feature: gene Location: 168219-169085 bp Feature: domain Description: RpoD Location: 168228-169083 bp Feature: domain Description: RpoD Location: 1 68228-1 69083 bp Feature: gene Location: 169563-170330 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 169605-170091 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 69605-1 70091 bp Feature: gene Location: 170520-172451 bp Feature: gene Location: 172462-175578 bp Feature: domain Description: RecB Location: 172489-172651 bp Feature: domain Description: RecB Location: 1 72489-1 72651 bp Feature: domain Description: RecB Location: 172969-175570 bp Feature: domain Description: RecB Location: 1 72969-1 75570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaB (TIGR00665), RVT-Retrons, DnaB_C (pfam03796), RVT-UG28b, COG3183 (Predicted restriction endonuclease, HNH family ), YprA (COG1205), AAA (TIGR00769), RpoD (COG0568), RecB (COG4998)