myRT

myRT report for GCA_902784465.1_Rumen_uncultured_genome_RUG12980

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Seq: CACZUZ010000014.1 uncultured Bacteroidetes bacterium isolate RUG12980 genome assembly, contig: RUG12980_asm_14, whole genome shotgun sequence (62763 bp)
Overview 1 RT 1: 37174-41042 bp Neighborhood of RT #1 [37174, 41042] RVT-DGRs Feature: gene Location: 37174-37542 bp Feature: gene Location: 37545-37976 bp Feature: gene Location: 37948-39033 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38212-38815 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3821 2-3881 5 bp Feature: gene Location: 39156-39314 bp Feature: gene Location: 39414-41042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CACZUZ010000021.1 uncultured Bacteroidetes bacterium isolate RUG12980 genome assembly, contig: RUG12980_asm_21, whole genome shotgun sequence (84356 bp)
Overview 1 RT 1: 3615-7162 bp 2 RT 2: 15658-21084 bp Neighborhood of RT #1 [3615, 7326] KOG0715 DnaB_C RVT-Retrons DUF3127 Neighborhood of RT #2 [15658, 21245] HATPase_c_3 RVT-Retrons WYL COG1373 Feature: gene Location: 3615-4085 bp Feature: domain Description: KOG0715 Location: 3621-3870 bp Feature: domain Description: KOG0715 Location: 362 1-3870 bp Feature: gene Location: 4096-4887 bp Feature: domain Description: DnaB_C Location: 4102-4789 bp Feature: domain Description: DnaB_C Location: 4102 -4789 bp Feature: gene Location: 5053-6318 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5428-6013 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 542 8-6013 bp Feature: gene Location: 6473-6643 bp Feature: gene Location: 6907-7326 bp Feature: domain Description: DUF3127 Location: 6913-7162 bp Feature: domain Description: DUF312 7 Location: 6913-7162 bp Feature: gene Location: 15658-16032 bp Feature: domain Description: HATPase_c_3 Location: 15781-16003 bp Feature: domain Description: HATPase_c_3 Location: 15781-16003 bp Feature: gene Location: 16063-16989 bp Feature: gene Location: 16982-18427 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17429-18014 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1742 9-18014 bp Feature: gene Location: 18868-19941 bp Feature: domain Description: WYL Location: 19351-19912 bp Feature: domain Description: WYL Location: 19351-19912 bp Feature: gene Location: 20034-21245 bp Feature: domain Description: COG1373 Location: 20130-21084 bp Feature: domain Description: COG1373 Location: 2 0130-2 1084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0715 (KOG0715, Molecular chaperone (DnaJ superfamily) ), DnaB_C (pfam03796), RVT-Retrons, DUF3127 (pfam11325), HATPase_c_3 (pfam13589), WYL (pfam13280), COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: CACZUZ010000042.1 uncultured Bacteroidetes bacterium isolate RUG12980 genome assembly, contig: RUG12980_asm_42, whole genome shotgun sequence (22663 bp)
Overview 1 RT 1: 20476-22651 bp Neighborhood of RT #1 [20476, 22662] PRK05808 GIIM RVT-GII Feature: gene Location: 20476-21312 bp Feature: domain Description: PRK05808 Location: 20482-21310 bp Feature: domain Description: PRK05808 Location: 20482-213 10 bp Feature: gene Location: 21421-21744 bp Feature: domain Description: GIIM Note: maturase Location: 21433-21580 bp Feature: domain Description: GIIM Note: maturase Location: 2143 3 -21580 bp Feature: gene Location: 21859-22662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22033-22651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2203 3 -22651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05808 (3-hydroxybutyryl-CoA dehydrogenase; Validated), GIIM (pfam08388), RVT-GII