myRT

myRT report for GCA_902784635.1_Rumen_uncultured_genome_RUG12987

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Seq: CACZVL010000003.1 uncultured Clostridiales bacterium isolate RUG12987 genome assembly, contig: RUG12987_asm_3, whole genome shotgun sequence (74947 bp)
Overview 1 RT 1: 25122-34845 bp Neighborhood of RT #1 [25122, 34845] Flg_new Flg_new RVT-DGRs CHAP PG_binding_1 SH3_3 Feature: gene Location: 25122-31886 bp Feature: domain Description: Flg_new Location: 30189-30393 bp Feature: domain Description: Flg_new Location: 301 89-30393 bp Feature: domain Description: Flg_new Location: 30612-30753 bp Feature: domain Description: Flg_new Location: 3061 2-30753 bp Feature: gene Location: 32018-32188 bp Feature: gene Location: 32305-33519 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32521-33124 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32521 -331 24 bp Feature: gene Location: 33577-34623 bp Feature: domain Description: CHAP Location: 33757-34021 bp Feature: domain Description: CHAP Location: 33757-34021 bp Feature: domain Description: PG_binding_1 Location: 34210-34381 bp Feature: domain Description: PG_binding_1 Location: 3421 0-34381 bp Feature: domain Description: SH3_3 Location: 34465-34606 bp Feature: domain Description: SH3_3 Location: 34465-34606 bp Feature: gene Location: 34624-34845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Flg_new (pfam09479), RVT-DGRs, CHAP (pfam05257), PG_binding_1 (pfam01471), SH3_3 (pfam08239)

Seq: CACZVL010000027.1 uncultured Clostridiales bacterium isolate RUG12987 genome assembly, contig: RUG12987_asm_27, whole genome shotgun sequence (46654 bp)
Overview 1 RT 1: 25650-34419 bp Neighborhood of RT #1 [25650, 34436] Kex1 RVT-UG26 NHLM_micro_ABC1 NHLM_micro_ABC2 Feature: gene Location: 25650-27170 bp Feature: domain Description: Kex1 Location: 25767-27108 bp Feature: domain Description: Kex1 Location: 2 5767-2 7108 bp Feature: gene Location: 27303-27821 bp Feature: gene Location: 28203-29504 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 28455-29076 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 2 8455-2 9076 bp Feature: gene Location: 30113-32269 bp Feature: domain Description: NHLM_micro_ABC1 Location: 30119-32240 bp Feature: domain Description: NHLM_micro_ABC1 Location: 30119-32 2 40 bp Feature: gene Location: 32370-34436 bp Feature: domain Description: NHLM_micro_ABC2 Location: 32529-34419 bp Feature: domain Description: NHLM_micro_ABC2 Location: 32 52 9-34419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Kex1 (COG2939), RVT-UG26, NHLM_micro_ABC1 (TIGR03796), NHLM_micro_ABC2 (TIGR03797)

Seq: CACZVL010000065.1 uncultured Clostridiales bacterium isolate RUG12987 genome assembly, contig: RUG12987_asm_65, whole genome shotgun sequence (11280 bp)
Overview 1 RT 1: 450-5077 bp Neighborhood of RT #1 [450, 5502] RVT-GII GIIM SH3_3 spore_SleB spore_SleB Feature: gene Location: 450-1826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 720-1338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 720-13 3 8 bp Feature: domain Description: GIIM Note: maturase Location: 1398-1614 bp Feature: domain Description: GIIM Note: maturase Location: 13 98-1614 bp Feature: gene Location: 2018-3700 bp Feature: gene Location: 3754-5502 bp Feature: domain Description: SH3_3 Location: 3844-4012 bp Feature: domain Description: SH3 _3 Location: 3 844-4012 bp Feature: domain Description: spore_SleB Location: 4621-4816 bp Feature: domain Description: spore_SleB Location: 4621-4816 bp Feature: domain Description: spore_SleB Location: 4927-5077 bp Feature: domain Description: spore_SleB Location: 4927-5077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SH3_3 (pfam08239), spore_SleB (TIGR02869)

Seq: CACZVL010000165.1 uncultured Clostridiales bacterium isolate RUG12987 genome assembly, contig: RUG12987_asm_165, whole genome shotgun sequence (6551 bp)
Overview 1 RT 1: 4005-6538 bp Neighborhood of RT #1 [4005, 6549] RVT-UG27 DUF2958 Feature: gene Location: 4005-4523 bp Feature: gene Location: 4550-4798 bp Feature: gene Location: 4827-6065 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 5022-5646 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 5022-564 6 bp Feature: gene Location: 6079-6549 bp Feature: domain Description: DUF2958 Location: 6241-6538 bp Feature: domain Description: DUF2958 Location: 624 1-6538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, DUF2958 (pfam11171)

Seq: CACZVL010000187.1 uncultured Clostridiales bacterium isolate RUG12987 genome assembly, contig: RUG12987_asm_187, whole genome shotgun sequence (2701 bp)
Overview 1 RT 1: 138-2688 bp Neighborhood of RT #1 [138, 2699] RVT-UG27 DUF2958 Feature: gene Location: 138-869 bp Feature: gene Location: 977-2215 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1172-1796 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1172-1796 bp Feature: gene Location: 2229-2699 bp Feature: domain Description: DUF2958 Location: 2391-2688 bp Feature: domain Description: DUF295 8 Location: 2391-2688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, DUF2958 (pfam11171)