myRT

myRT report for GCA_902785845.1_Rumen_uncultured_genome_RUG13109

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Seq: CADAAG010000001.1 uncultured Prevotellaceae bacterium isolate RUG13109 genome assembly, contig: RUG13109_asm_1, whole genome shotgun sequence (85642 bp)
Overview 1 RT 1: 4140-13739 bp Neighborhood of RT #1 [4140, 15121] DUF4376 RVT-DGRs LRR_5 Feature: gene Location: 4140-4427 bp Feature: gene Location: 4427-5122 bp Feature: domain Description: DUF4376 Location: 4769-5060 bp Feature: domain Description: DUF4376 Location: 4769-5060 bp Feature: gene Location: 5132-6499 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5384-5984 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5384-5984 bp Feature: gene Location: 6780-6959 bp Feature: gene Location: 7016-15121 bp Feature: domain Description: LRR_5 Location: 13412-13739 bp Feature: domain Description: LRR_5 Location: 1 341 2-1 3739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4376 (pfam14301), RVT-DGRs, LRR_5 (pfam13306)

Seq: CADAAG010000006.1 uncultured Prevotellaceae bacterium isolate RUG13109 genome assembly, contig: RUG13109_asm_6, whole genome shotgun sequence (57645 bp)
Overview 1 RT 1: 14822-18763 bp 2 RT 2: 34907-43618 bp Neighborhood of RT #1 [14822, 18837] predic_Ig_block DUF4134 RVT-GII Intron_maturas2 DUF4134 DUF4133 Neighborhood of RT #2 [34907, 43618] RVT-Retrons WYL Feature: gene Location: 14822-15460 bp Feature: domain Description: predic_Ig_block Location: 14876-15338 bp Feature: domain Description: predic_Ig_block Location: 14876-15338 bp Feature: gene Location: 15634-15942 bp Feature: domain Description: DUF4134 Location: 15718-15898 bp Feature: domain Description: DUF4134 Location: 15718-15898 bp Feature: gene Location: 16401-18227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16677-17499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16677-17499 bp Feature: domain Description: Intron_maturas2 Location: 17571-17886 bp Feature: domain Description: Intron_maturas2 Location: 17571-17886 bp Feature: gene Location: 18291-18443 bp Feature: domain Description: DUF4134 Location: 18333-18438 bp Feature: domain Description: DUF4134 Location: 18333-18438 bp Feature: gene Location: 18556-18837 bp Feature: domain Description: DUF4133 Location: 18580-18763 bp Feature: domain Description: DUF4133 Location: 18580-18763 bp Feature: gene Location: 34907-37147 bp Feature: gene Location: 37151-38347 bp Feature: gene Location: 38367-40022 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38550-39138 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38550-39138 bp Feature: gene Location: 40281-41291 bp Feature: domain Description: WYL Location: 40713-41262 bp Feature: domain Description: WYL Location: 40713-412 62 bp Feature: gene Location: 41351-43618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT predic_Ig_block (TIGR04526), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), DUF4133 (pfam13571), RVT-Retrons, WYL (pfam13280)

Seq: CADAAG010000288.1 uncultured Prevotellaceae bacterium isolate RUG13109 genome assembly, contig: RUG13109_asm_288, whole genome shotgun sequence (4375 bp)
Overview 1 RT 1: 1-1960 bp Neighborhood of RT #1 [1, 2031] RVT-Retrons LRR_5 Feature: gene Location: 1-870 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4-628 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4-628 bp Feature: gene Location: 877-1581 bp Feature: gene Location: 1699-2031 bp Feature: domain Description: LRR_5 Location: 1708-1960 bp Feature: domain Description: LRR_5 Location: 1708-1960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LRR_5 (pfam13306), RVT-Retrons