myRT

myRT report for GCA_902786515.1_Rumen_uncultured_genome_RUG13174

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Seq: CADADA010000018.1 uncultured Lachnospiraceae bacterium isolate RUG13174 genome assembly, contig: RUG13174_asm_18, whole genome shotgun sequence (80286 bp)
Overview 1 RT 1: 54794-58461 bp Neighborhood of RT #1 [54794, 58490] FrvX Cas2_I_II_III RVT-CRISPR AgrB LytT Feature: gene Location: 54794-55384 bp Feature: domain Description: FrvX Location: 54818-55088 bp Feature: domain Description: FrvX Location: 5481 8-55088 bp Feature: gene Location: 56156-56416 bp Feature: domain Description: Cas2_I_II_III Location: 56165-56387 bp Feature: domain Description: Cas2_I_II_III Location: 561 65-56387 bp Feature: gene Location: 56434-56805 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 56650-56788 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 56650-56788 bp Feature: gene Location: 57082-57672 bp Feature: domain Description: AgrB Location: 57103-57625 bp Feature: domain Description: AgrB Location: 571 03-57625 bp Feature: gene Location: 57750-58490 bp Feature: domain Description: LytT Location: 57753-58461 bp Feature: domain Description: LytT Location: 57753-58461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FrvX (COG1363), Cas2_I_II_III (cl11442), RVT-CRISPR, AgrB (smart00793), LytT (COG3279)

Seq: CADADA010000040.1 uncultured Lachnospiraceae bacterium isolate RUG13174 genome assembly, contig: RUG13174_asm_40, whole genome shotgun sequence (25012 bp)
Overview 1 RT 1: 124-3442 bp Neighborhood of RT #1 [124, 3442] RVT_N RVT-GII GIIM Feature: gene Location: 124-1905 bp Feature: domain Description: RVT_N Location: 277-520 bp Feature: domain Description: RVT_N Location: 2 77-52 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565-1213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565-12 13 bp Feature: domain Description: GIIM Note: maturase Location: 1267-1498 bp Feature: domain Description: GIIM Note: maturase Location: 12 67-1498 bp Feature: gene Location: 1906-3039 bp Feature: gene Location: 3170-3442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CADADA010000050.1 uncultured Lachnospiraceae bacterium isolate RUG13174 genome assembly, contig: RUG13174_asm_50, whole genome shotgun sequence (12672 bp)
Overview 1 RT 1: 81-7851 bp Neighborhood of RT #1 [81, 7937] VirB4_CagE RVT-GII TraC-F-type RVT-GII VirB4 IstB_IS21 Feature: gene Location: 81-542 bp Feature: domain Description: VirB4_CagE Location: 147-393 bp Feature: domain Description: VirB4_CagE Location: 147-3 93 bp Feature: gene Location: 599-2524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 923-1661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 923 -1661 bp Feature: gene Location: 3313-3849 bp Feature: domain Description: TraC-F-type Location: 3457-3820 bp Feature: domain Description: TraC-F-type Location: 3 457-3 820 bp Feature: gene Location: 3978-5801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4278-4977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4278-4977 bp Feature: gene Location: 6482-7042 bp Feature: domain Description: VirB4 Location: 6488-6983 bp Feature: domain Description: VirB4 Location: 6488-6983 bp Feature: gene Location: 7170-7937 bp Feature: domain Description: IstB_IS21 Location: 7329-7851 bp Feature: domain Description: IstB_IS21 Location: 73 29-7851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4_CagE (TIGR00929), RVT-GII, TraC-F-type (TIGR02746), VirB4 (COG3451), IstB_IS21 (pfam01695)

Seq: CADADA010000054.1 uncultured Lachnospiraceae bacterium isolate RUG13174 genome assembly, contig: RUG13174_asm_54, whole genome shotgun sequence (11616 bp)
Overview 1 RT 1: 2-4947 bp Neighborhood of RT #1 [2, 5399] RVT_N RVT-GII YkfC COG4646 Feature: gene Location: 2-184 bp Feature: gene Location: 545-760 bp Feature: gene Location: 798-2555 bp Feature: domain Description: RVT_N Location: 969-1212 bp Feature: domain Description: RVT_N Location: 969-1212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1257-1905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1257-1905 bp Feature: domain Description: YkfC Location: 2073-2217 bp Feature: domain Description: YkfC Location: 2073-2217 bp Feature: gene Location: 2798-2986 bp Feature: gene Location: 3030-5399 bp Feature: domain Description: COG4646 Location: 3084-4947 bp Feature: domain Description: COG4 64 6 Location: 3084 -4 94 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: CADADA010000068.1 uncultured Lachnospiraceae bacterium isolate RUG13174 genome assembly, contig: RUG13174_asm_68, whole genome shotgun sequence (7740 bp)
Overview 1 RT 1: 6328-7718 bp Neighborhood of RT #1 [6328, 7738] PL1_Passenger_AT GIIM RVT-GII Feature: gene Location: 6328-6588 bp Feature: domain Description: PL1_Passenger_AT Location: 6331-6574 bp Feature: domain Description: PL1_Passenger_AT Location: 6331-65 74 bp Feature: gene Location: 6685-7035 bp Feature: domain Description: GIIM Note: maturase Location: 6796-7009 bp Feature: domain Description: GIIM Note: maturase Location: 6796-7009 bp Feature: gene Location: 7061-7738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7232-7718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7232-7718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PL1_Passenger_AT (cd01343), GIIM (pfam08388), RVT-GII