myRT

myRT report for GCA_902787645.1_Rumen_uncultured_genome_RUG13284

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Seq: CADAGZ010000003.1 uncultured Prevotellaceae bacterium isolate RUG13284 genome assembly, contig: RUG13284_asm_3, whole genome shotgun sequence (212877 bp)
Overview 1 RT 1: 3519-9413 bp Neighborhood of RT #1 [3519, 9421] SusD SusD 2-Hacid_dh_4 RVT-Retrons kpsF PRK05198 Feature: gene Location: 3519-4859 bp Feature: domain Description: SusD Location: 3840-3945 bp Feature: domain Description: SusD Location: 3840-3945 bp Feature: domain Description: SusD Location: 3987-4794 bp Feature: domain Description: SusD Location: 3987-4794 bp Feature: gene Location: 4982-5944 bp Feature: domain Description: 2-Hacid_dh_4 Location: 4991-5912 bp Feature: domain Description: 2-Hacid_dh_4 Location: 4991 -591 2 bp Feature: gene Location: 6205-7641 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6469-7051 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6469-7051 bp Feature: gene Location: 7702-8652 bp Feature: domain Description: kpsF Location: 7828-8629 bp Feature: domain Description: kpsF Location: 7828-8629 bp Feature: gene Location: 8660-9421 bp Feature: domain Description: PRK05198 Location: 8669-9413 bp Feature: domain Description: PRK051 98 Location: 8669-941 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SusD (NF033071), 2-Hacid_dh_4 (cd12162), RVT-Retrons, kpsF (TIGR00393), PRK05198 (2-dehydro-3-deoxyphosphooctonate aldolase; Provisional)

Seq: CADAGZ010000007.1 uncultured Prevotellaceae bacterium isolate RUG13284 genome assembly, contig: RUG13284_asm_7, whole genome shotgun sequence (78639 bp)
Overview 1 RT 1: 58603-63043 bp Neighborhood of RT #1 [58603, 63249] DUF1016_N YhcG_C RVT-UNC SusD Feature: gene Location: 58603-59643 bp Feature: domain Description: DUF1016_N Location: 58660-59062 bp Feature: domain Description: DUF1016_N Location: 58660-59062 bp Feature: domain Description: YhcG_C Location: 59137-59596 bp Feature: domain Description: YhcG_C Location: 59137-59596 bp Feature: gene Location: 59983-60255 bp Feature: gene Location: 60498-60728 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 60639-60717 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 60639-60717 bp Feature: gene Location: 60777-61592 bp Feature: gene Location: 61603-63249 bp Feature: domain Description: SusD Location: 61741-63043 bp Feature: domain Description: SusD Location: 61741-63043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1016_N (pfam17761), YhcG_C, RVT-CRISPR/RVT-UG7/RVT-GII(RVT-UNC), SusD (NF033071)

Seq: CADAGZ010000022.1 uncultured Prevotellaceae bacterium isolate RUG13284 genome assembly, contig: RUG13284_asm_22, whole genome shotgun sequence (90434 bp)
Overview 1 RT 1: 2778-8643 bp Neighborhood of RT #1 [2778, 8675] YejR RVT-GII GIIM OafA PqqL Feature: gene Location: 2778-4106 bp Feature: domain Description: YejR Location: 2796-4095 bp Feature: domain Description: YejR Location: 2796-4095 bp Feature: gene Location: 4337-4597 bp Feature: gene Location: 4594-6009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4936-5554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 493 6-5554 bp Feature: domain Description: GIIM Note: maturase Location: 5614-5821 bp Feature: domain Description: GIIM Note: maturase Location: 5614-5821 bp Feature: gene Location: 6160-7155 bp Feature: domain Description: OafA Location: 6223-7090 bp Feature: domain Description: OafA Location: 6223 -7090 bp Feature: gene Location: 7437-8675 bp Feature: domain Description: PqqL Location: 7446-8643 bp Feature: domain Description: PqqL Location: 7446-8643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YejR (COG0523), RVT-GII, GIIM (pfam08388), OafA (COG1835), PqqL (COG0612)

Seq: CADAGZ010000097.1 uncultured Prevotellaceae bacterium isolate RUG13284 genome assembly, contig: RUG13284_asm_97, whole genome shotgun sequence (3850 bp)
Overview 1 RT 1: 254-2680 bp Neighborhood of RT #1 [254, 3459] RVT-Retrons TPR_12 TPR_12 Feature: gene Location: 254-1123 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 440-950 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 4 0-950 bp Feature: gene Location: 1142-1390 bp Feature: gene Location: 1840-3459 bp Feature: domain Description: TPR_12 Location: 2173-2368 bp Feature: domain Description: TPR_12 Location: 2173-2368 bp Feature: domain Description: TPR_12 Location: 2545-2680 bp Feature: domain Description: TPR_12 Location: 254 5-2680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TPR_12 (pfam13424)