myRT

myRT report for GCA_902787745.1_Rumen_uncultured_genome_RUG13300

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Seq: CADAHO010000027.1 uncultured Lachnospiraceae bacterium isolate RUG13300 genome assembly, contig: RUG13300_asm_27, whole genome shotgun sequence (24244 bp)
Overview 1 RT 1: 18481-23545 bp Neighborhood of RT #1 [18481, 23545] UgpA PBP2_oligosaccharide_1 RVT-GII GIIM Feature: gene Location: 18481-19863 bp Feature: domain Description: UgpA Location: 18952-19846 bp Feature: domain Description: UgpA Location: 1 8952-1 9846 bp Feature: gene Location: 19938-21149 bp Feature: domain Description: PBP2_oligosaccharide_1 Location: 20019-21087 bp Feature: domain Description: PBP2_oligosaccharide_1 Location: 2001 9-21 087 bp Feature: gene Location: 21334-22341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21343-21889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 343-21 889 bp Feature: domain Description: GIIM Note: maturase Location: 21943-22162 bp Feature: domain Description: GIIM Note: maturase Location: 21 943-221 62 bp Feature: gene Location: 22355-23221 bp Feature: gene Location: 23357-23545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpA (COG1175), PBP2_oligosaccharide_1 (cd13655), RVT-GII, GIIM (pfam08388)

Seq: CADAHO010000035.1 uncultured Lachnospiraceae bacterium isolate RUG13300 genome assembly, contig: RUG13300_asm_35, whole genome shotgun sequence (14033 bp)
Overview 1 RT 1: 144-4319 bp Neighborhood of RT #1 [144, 4915] RVT-GII GIIM 2-Hacid_dh_1 GHL6 A4_beta-galactosidase_middle_domain Feature: gene Location: 144-1427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354-969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354-969 bp Feature: domain Description: GIIM Note: maturase Location: 1029-1245 bp Feature: domain Description: GIIM Note: maturase Location: 102 9-12 45 bp Feature: gene Location: 1518-2636 bp Feature: domain Description: 2-Hacid_dh_1 Location: 1548-2484 bp Feature: domain Description: 2 -Hacid_dh_1 Location: 1548-2 484 bp Feature: gene Location: 2930-4915 bp Feature: domain Description: GHL6 Location: 3011-3395 bp Feature: domain Description: GHL6 Location: 3011-3395 bp Feature: domain Description: A4_beta-galactosidase_middle_domain Location: 4001-4319 bp Feature: domain Description: A4_beta-galactosidase_middle_domain Location: 4001-4319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), 2-Hacid_dh_1 (cd05300), GHL6 (pfam14871), A4_beta-galactosidase_middle_domain (cd03143)

Seq: CADAHO010000116.1 uncultured Lachnospiraceae bacterium isolate RUG13300 genome assembly, contig: RUG13300_asm_116, whole genome shotgun sequence (7670 bp)
Overview 1 RT 1: 2432-7662 bp Neighborhood of RT #1 [2432, 7667] KOG2230 Ig_mannosidase RVT-UG26 Lactonase Feature: gene Location: 2432-4918 bp Feature: domain Description: KOG2230 Location: 2510-4385 bp Feature: domain Description: KOG223 0 Location: 2510-43 85 bp Feature: domain Description: Ig_mannosidase Location: 4700-4913 bp Feature: domain Description: Ig_mannosidase Location: 4700-4913 bp Feature: gene Location: 5059-5616 bp Feature: gene Location: 5926-7056 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 6043-6661 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 6043 -6661 bp Feature: gene Location: 7155-7667 bp Feature: domain Description: Lactonase Location: 7170-7662 bp Feature: domain Description: Lactonase Location: 7170-7662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG2230 (KOG2230, Predicted beta-mannosidase ), Ig_mannosidase (pfam17753), RVT-UG26, Lactonase (pfam10282)