myRT

myRT report for GCA_902787815.1_Rumen_uncultured_genome_RUG13308

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Seq: CADAHY010000060.1 uncultured Lachnospiraceae bacterium isolate RUG13308 genome assembly, contig: RUG13308_asm_60, whole genome shotgun sequence (12097 bp)
Overview 1 RT 1: 2666-8888 bp Neighborhood of RT #1 [2666, 8888] DUF5372 RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like INT_RitA_C_like RVT-GII GIIM LysR Feature: gene Location: 2666-3073 bp Feature: gene Location: 3096-3377 bp Feature: domain Description: DUF5372 Location: 3156-3366 bp Feature: domain Description: DUF5372 Location: 31 56-3366 bp Feature: gene Location: 3353-3772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3368-3719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3368-371 9 bp Feature: gene Location: 3829-4842 bp Feature: domain Description: Phage_int_SAM_1 Location: 3883-4120 bp Feature: domain Description: Phage_int_SAM_1 Location: 3883-41 20 bp Feature: domain Description: INT_RitC_C_like Location: 4210-4756 bp Feature: domain Description: INT_RitC_C_like Location: 421 0-4756 bp Feature: gene Location: 4823-5803 bp Feature: domain Description: INT_RitB_C_like Location: 5156-5732 bp Feature: domain Description: INT_RitB_C_like Location: 51 56-5732 bp Feature: gene Location: 5787-7088 bp Feature: domain Description: INT_RitA_C_like Location: 6513-7053 bp Feature: domain Description: INT_RitA_C_like Location: 651 3-7053 bp Feature: gene Location: 7274-7942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7277-7484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7277-7484 bp Feature: domain Description: GIIM Note: maturase Location: 7544-7757 bp Feature: domain Description: GIIM Note: maturase Location: 7544-7757 bp Feature: gene Location: 8023-8496 bp Feature: domain Description: LysR Location: 8026-8410 bp Feature: domain Description: LysR Location: 8026-841 0 bp Feature: gene Location: 8664-8888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), INT_RitA_C_like (cd01188), GIIM (pfam08388), LysR (COG0583)

Seq: CADAHY010000210.1 uncultured Lachnospiraceae bacterium isolate RUG13308 genome assembly, contig: RUG13308_asm_210, whole genome shotgun sequence (4806 bp)
Overview 1 RT 1: 76-2639 bp Neighborhood of RT #1 [76, 2686] ocin_ocin_ocin_TIGR03798 Fic RVT-UG26 Smr Feature: gene Location: 76-462 bp Feature: domain Description: ocin_ocin_ocin_TIGR03798 Location: 268-433 bp Feature: domain Description: ocin_ocin_ocin_TIGR03798 Location: 2 68-433 bp Feature: gene Location: 449-1129 bp Feature: domain Description: Fic Location: 623-917 bp Feature: domain Description: Fic Location: 62 3-917 bp Feature: gene Location: 1133-2323 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 1397-1961 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 1397-1961 bp Feature: gene Location: 2337-2465 bp Feature: gene Location: 2477-2686 bp Feature: domain Description: Smr Location: 2480-2639 bp Feature: domain Description: Smr Location: 2 480-2 639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ocin_ocin_ocin_TIGR03798, Fic (pfam02661), RVT-UG26, Smr (pfam01713)