myRT

myRT report for GCA_902788525.1_Rumen_uncultured_genome_RUG13378

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Seq: CADAKO010000003.1 uncultured Lachnospiraceae bacterium isolate RUG13378 genome assembly, contig: RUG13378_asm_3, whole genome shotgun sequence (145447 bp)
Overview 1 RT 1: 144-5630 bp Neighborhood of RT #1 [144, 5635] RVT-GII GIIM trpE_most PRK14607 Feature: gene Location: 144-455 bp Feature: gene Location: 554-1885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 812-1427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 2-1 427 bp Feature: domain Description: GIIM Note: maturase Location: 1490-1703 bp Feature: domain Description: GIIM Note: maturase Location: 1 490-1 703 bp Feature: gene Location: 2380-3981 bp Feature: domain Description: trpE_most Location: 2599-3955 bp Feature: domain Description: trpE_most Location: 2599-3955 bp Feature: gene Location: 3995-5635 bp Feature: domain Description: PRK14607 Location: 3998-5630 bp Feature: domain Description: PRK1 4607 Location: 3998-5630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), trpE_most (TIGR00564), PRK14607 (bifunctional anthranilate synthase component II/anthranilate phosphoribosyltransferase)

Seq: CADAKO010000014.1 uncultured Lachnospiraceae bacterium isolate RUG13378 genome assembly, contig: RUG13378_asm_14, whole genome shotgun sequence (77268 bp)
Overview 1 RT 1: 45996-51825 bp Neighborhood of RT #1 [45996, 51890] Uup ABC_tran_CTD RVT-UG26 CcmA Feature: gene Location: 45996-47843 bp Feature: domain Description: Uup Location: 45999-47481 bp Feature: domain Description: Uup Location: 45999-47481 bp Feature: domain Description: ABC_tran_CTD Location: 47604-47799 bp Feature: domain Description: ABC_tran_CTD Location: 47604-47799 bp Feature: gene Location: 47933-48496 bp Feature: gene Location: 48586-49959 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 48928-49561 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 4892 8-49561 bp Feature: gene Location: 50199-51035 bp Feature: gene Location: 51093-51890 bp Feature: domain Description: CcmA Location: 51156-51825 bp Feature: domain Description: CcmA Location: 51156-5182 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uup (COG0488), ABC_tran_CTD (pfam16326), RVT-UG26, CcmA (COG4133)

Seq: CADAKO010000038.1 uncultured Lachnospiraceae bacterium isolate RUG13378 genome assembly, contig: RUG13378_asm_38, whole genome shotgun sequence (21245 bp)
Overview 1 RT 1: 212-2253 bp Neighborhood of RT #1 [212, 2690] RVT-GII GIIM GtrA GtrA DPM1_like_bac Feature: gene Location: 212-1111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-653 bp Feature: domain Description: GIIM Note: maturase Location: 713-941 bp Feature: domain Description: GIIM Note: maturase Location: 713 -941 bp Feature: gene Location: 1175-1699 bp Feature: domain Description: GtrA Location: 1214-1505 bp Feature: domain Description: GtrA Location: 1214-1505 bp Feature: domain Description: GtrA Location: 1592-1694 bp Feature: domain Description: GtrA Location: 1592-1694 bp Feature: gene Location: 1692-2690 bp Feature: domain Description: DPM1_like_bac Location: 1710-2253 bp Feature: domain Description: DPM1_like_bac Location: 1710-2253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GtrA (pfam04138), DPM1_like_bac (cd04187)