myRT

myRT report for GCA_902789135.1_Rumen_uncultured_genome_RUG13438

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Seq: CADAMW010000035.1 uncultured Lachnospiraceae bacterium isolate RUG13438 genome assembly, contig: RUG13438_asm_35, whole genome shotgun sequence (33321 bp)
Overview 1 RT 1: 29661-33121 bp Neighborhood of RT #1 [29661, 33121] RVT-DGRs Feature: gene Location: 29661-31241 bp Feature: gene Location: 31476-31688 bp Feature: gene Location: 31687-32820 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31849-32554 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31 849-32554 bp Feature: gene Location: 32765-33121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CADAMW010000073.1 uncultured Lachnospiraceae bacterium isolate RUG13438 genome assembly, contig: RUG13438_asm_73, whole genome shotgun sequence (11208 bp)
Overview 1 RT 1: 7134-10312 bp Neighborhood of RT #1 [7134, 10545] HipB HAD_BPGM-like RVT-GII GIIM Feature: gene Location: 7134-8249 bp Feature: domain Description: HipB Location: 7164-7395 bp Feature: domain Description: HipB Location: 7164-7395 bp Feature: gene Location: 8848-9099 bp Feature: domain Description: HAD_BPGM-like Location: 8917-9040 bp Feature: domain Description: HAD_BPGM-like Location: 8917-9040 bp Feature: gene Location: 9220-10545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9421-10039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 942 1-10039 bp Feature: domain Description: GIIM Note: maturase Location: 10096-10312 bp Feature: domain Description: GIIM Note: maturase Location: 10096-10312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), HAD_BPGM-like (cd16423), RVT-GII, GIIM (pfam08388)

Seq: CADAMW010000096.1 uncultured Lachnospiraceae bacterium isolate RUG13438 genome assembly, contig: RUG13438_asm_96, whole genome shotgun sequence (13632 bp)
Overview 1 RT 1: 138-4650 bp Neighborhood of RT #1 [138, 4685] RVT-GII TraC-F-type Feature: gene Location: 138-2051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-1200 bp Feature: gene Location: 2166-2429 bp Feature: gene Location: 2757-4685 bp Feature: domain Description: TraC-F-type Location: 3636-4650 bp Feature: domain Description: TraC-F-type Location: 3 63 6-4650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TraC-F-type (TIGR02746)

Seq: CADAMW010000140.1 uncultured Lachnospiraceae bacterium isolate RUG13438 genome assembly, contig: RUG13438_asm_140, whole genome shotgun sequence (9253 bp)
Overview 1 RT 1: 5436-8386 bp Neighborhood of RT #1 [5436, 8502] Maff2 RVT-GII HNHc Feature: gene Location: 5436-6305 bp Feature: gene Location: 6380-6583 bp Feature: domain Description: Maff2 Location: 6488-6578 bp Feature: domain Description: Maff2 Location: 64 88-6578 bp Feature: gene Location: 6613-8502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6949-7687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694 9-7687 bp Feature: domain Description: HNHc Note: nucleases Location: 8236-8386 bp Feature: domain Description: HNHc Note: nucleases Location: 8236-8386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, HNHc (smart00507)

Seq: CADAMW010000205.1 uncultured Lachnospiraceae bacterium isolate RUG13438 genome assembly, contig: RUG13438_asm_205, whole genome shotgun sequence (3415 bp)
Overview 1 RT 1: 195-3191 bp Neighborhood of RT #1 [195, 3191] DDE_Tnp_IS66 RVT-GII Feature: gene Location: 195-659 bp Feature: domain Description: DDE_Tnp_IS66 Location: 411-549 bp Feature: domain Description: DDE_Tnp_IS66 Location: 411-5 49 bp Feature: gene Location: 677-844 bp Feature: gene Location: 1191-2288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1377-2097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1377-2097 bp Feature: gene Location: 2314-2841 bp Feature: gene Location: 2979-3191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050)