myRT

myRT report for GCA_902789975.1_Rumen_uncultured_genome_RUG13529

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Seq: CADAQL010000023.1 uncultured Ruminococcus sp. isolate RUG13529 genome assembly, contig: RUG13529_asm_23, whole genome shotgun sequence (16497 bp)
Overview 1 RT 1: 11129-14758 bp Neighborhood of RT #1 [11129, 16386] Cas2_I_II_III RVT-CRISPR cas1_HMARI KOG1605 Feature: gene Location: 11129-11260 bp Feature: gene Location: 11309-11572 bp Feature: domain Description: Cas2_I_II_III Location: 11318-11516 bp Feature: domain Description: Cas2_I_II_III Location: 1 1 31 8-1 1 51 6 bp Feature: gene Location: 11572-13485 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 11788-12355 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 1 788-1 2355 bp Feature: domain Description: cas1_HMARI Location: 12496-13474 bp Feature: domain Description: cas1 _HMARI Location: 1 2496-1 3474 bp Feature: gene Location: 13915-16386 bp Feature: domain Description: KOG1605 Location: 14020-14758 bp Feature: domain Description: KOG1 605 Location: 1 4020-1 4758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, cas1_HMARI (TIGR03641), KOG1605 (KOG1605, TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) )

Seq: CADAQL010000204.1 uncultured Ruminococcus sp. isolate RUG13529 genome assembly, contig: RUG13529_asm_204, whole genome shotgun sequence (3746 bp)
Overview 1 RT 1: 832-3606 bp Neighborhood of RT #1 [832, 3606] RVT-UG26 TipAS Feature: gene Location: 832-1317 bp Feature: gene Location: 1364-1555 bp Feature: gene Location: 1563-2771 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 1698-2316 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 1698-2 316 bp Feature: gene Location: 2794-3219 bp Feature: domain Description: TipAS Location: 2854-3199 bp Feature: domain Description: TipAS Location: 2 854-3199 bp Feature: gene Location: 3304-3606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, TipAS (pfam07739)

Seq: CADAQL010000230.1 uncultured Ruminococcus sp. isolate RUG13529 genome assembly, contig: RUG13529_asm_230, whole genome shotgun sequence (3314 bp)
Overview 1 RT 1: 1-2940 bp Neighborhood of RT #1 [1, 3311] RVT-GII COG4646 Feature: gene Location: 1-1620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301-1042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 01-1042 bp Feature: gene Location: 1791-1970 bp Feature: gene Location: 2319-3311 bp Feature: domain Description: COG4646 Location: 2322-2940 bp Feature: domain Description: COG4646 Location: 23 22-2940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG4646 (Adenine-specific DNA methylase, N12 class )